RNA id: TCONS_00052023


Basic Information

Item Value
RNA id TCONS_00052023
length 695
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_026718
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45818626 ~ 45822914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGGGAACTGATGGGTCCTGAGGATCCCATTGAAGCCCGTACTGTAGATCAGACACTATGGAGGGCCCAGTTTGGCTCTGACAGACTCCATAATGGCATCTATGGATCTCGATCTTATCGAAATGCTATAGAAGACATGAAGCTGCTATTTCCAAGCGGTGTGTGTTGCGCTGAAACTTCACTTATGAGATATGAGCAGATATCAAGTTTGCAGTCGGATCCCGAGGCTAGTTTGGACCATGACCATTTGCACACCTCCCAAACTGCTGTCAAATTTTCATCAGAATTTGGTCAAGTGCCAGCAGGGCCTTTGGTCTGCACTGCTCTTTGTCAGACCACCTGCCTGCTGATCCCATCCAGCCTCCTCCAGCAGAGTCAGCCTCCTCTGTTCTCAGAACTGCTGCAGAGGCTGTTTAGGACAGGCTGCCATCTGCTGGCCGGAAGGCTTTGCATGCTAGATAAAAAACAAAGACGCCACATGTGTGAGTTACTGAGGGCCTCTGCTGGGGAAGAACTTCTACATGAGGGTCCCTGCCTTGCCATTGTTTTGCAAGCCGACAATGCTGCGACATGCTTCGACATCATTCTTGAGAGAGTTTGTAGGGAGAGACCTGACTTTAGGAGAGTTACAAGAAAACTTCTTTACCCACGCTTCAAAAAAGAGGCTGTGAAATTGCTGTGTTACCTGTTCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052022 lncRNA downstream 40517 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00053102 lncRNA downstream 275175 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00053101 lncRNA downstream 1482773 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1694256 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1929183 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00052487 lncRNA upstream 9163 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052024 lncRNA upstream 10926 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052488 lncRNA upstream 330213 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052028 lncRNA upstream 401675 46224589 ~ 46225847 (-) False XLOC_026723
TCONS_00052030 lncRNA upstream 401683 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052020 mRNA downstream 40503 45776370 ~ 45778123 (-) False XLOC_026717
TCONS_00052021 mRNA downstream 41400 45776377 ~ 45777226 (-) False XLOC_026717
TCONS_00052019 mRNA downstream 457053 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052018 mRNA downstream 491729 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052016 mRNA downstream 510232 45283391 ~ 45308394 (-) False XLOC_026713
TCONS_00052025 mRNA upstream 22093 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA upstream 23285 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052027 mRNA upstream 220492 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052037 mRNA upstream 554391 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052038 mRNA upstream 564946 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052007 other downstream 1724400 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2952426 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 4506483 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5288847 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5288848 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1372223 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3254848 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3992283 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4281157 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5725219 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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