RNA id: TCONS_00052024


Basic Information

Item Value
RNA id TCONS_00052024
length 1700
lncRNA type lincRNA
GC content 0.40
exon number 4
gene id XLOC_026719
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45832077 ~ 45843700 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCAAATGTCGCGTCAAACTGTGACAGAGAAGCCAACCGCAGTGTCAACAAAGCGTGTCTACGGCGTATGTGGTCGCCATGTCAACTACAGTTTCTGTTTGCCGGAGTCGTGAGAACCGCGTTCCAACTTTCAGAGTGAACACCGGCCACCTGTTTACTACAGCATTTTGAAGAGAAAAGACACCCACCTTCAGACATGCAGAGGACTTTAGTCGACATTATATCCAAGATACCAACCCTTGACTCTGACCTGTCATCATCTGACACCGAAGAAGACATGTCTATTCTTCATCAGCATCCACCAGTGAGTCACTCTCTGGAAGGGACCAGTTTAGAAAAGTCAGAAGtcaaggtgtgtgtttgtgttggtgcgagaaaatataataatttatcagATCACATTGTCTTTGACAAAATATTTACTCAAATCTGTTGCAGTTTTTGCCTTCTTGGACTGCTGATGACCAAAAAGGTGATTATAATCATCTGCTTCCAATGGGTCACAATACAGAAAGACCTATTAATGAAAGAGTGAAACATAAAACAGAAAGCAATCCTTCAGCAAACAAGACACAATTGACTGAAAACCAGCTCTGTTCTTTTTTGTCACTGGCAGTAAGTTAGGATGTATTTAATCACATTTTCAGCCAAGGGATACTAAATAAAGGCCtatgtaacaaattattatttcaaCAGCCTCTTGATACCTGGGATCTCGACCACGTCCTTCAGACTCTAAAGCAACATAAACCTCTTGTCAAGCCAATTCAGGCTGATATACTAAAAGGTTGGATTGCAGCCACTGTTTTATCCATTAACATTTACGCTACATTTCAGAATAACACAAAatgatcttttcttttttatagacAATGAAAGGGAAATGCATGAAAATGATTTAATGGAGCAGCTGGTTGCTTTTTGTGAGAGGAAAGTAAATGAAACGGAAATAAAACCTGCCAAATCTGATAATACACAAGAATTATCTCTCAGAGCAACTGGGAGAGACGTGGTGGACTTTAAAAGGAGCTCAGTACAATTACAACTCAATGACGATTCTCCCACTATATATATTGATTTGCGCACAAATGAATTTCAAACAACACTGTCAGACGTTAGCCAGAGTGACAGTGCTATATGTCCTACAAACCTGGACAAGGAAATTATCTCCTCTAAAGAGACCACAATTCCAATAGCAAATGGACAGAAAAGAGAATTCGCAGGAAAGCGATTACTACTGCACAACTCAAGTCAGTCAAAACAAAGTATGTCAGAGATGTCCGTGAGCTTGAGAAATCCACAAGGTTTGGCTGAGGCTAGGCAGAGAAACTCTTCAGGGAAAACTATAAAAGAAAACCAGCTTCAGGATTCTGAATCTTGCTGTAGTGAACCAGGTATTCAGCGGGTCAATGTCTGCTGTTCGCCTCCAAAATATAACCATAAACAGAATTCTCAATCTTCTCACTTTCCAGTTGCTGGAAACAAACAAAGGTACGTAATAATCTTACTTTTATTTCTTAACCTAAGACATGAACACaacataatatttacatttatcccCATGTGCAAAGAGATCACCACAATCATAAAAtcagatatgagaaagatctcAAGTTTTTGCAAACATCCAGACCTCAACGTTCGGCAAATAACAGGGATGACGTGGCTGAGAGGACTGATATTCTTTATGACCCTGTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052022 lncRNA downstream 55731 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00053102 lncRNA downstream 290389 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00053101 lncRNA downstream 1497987 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1709470 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1944397 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00052488 lncRNA upstream 309427 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052028 lncRNA upstream 380889 46224589 ~ 46225847 (-) False XLOC_026723
TCONS_00052030 lncRNA upstream 380897 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052029 lncRNA upstream 380897 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052031 lncRNA upstream 380899 46224599 ~ 46225845 (-) False XLOC_026723
TCONS_00052023 mRNA downstream 10926 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052020 mRNA downstream 55717 45776370 ~ 45778123 (-) False XLOC_026717
TCONS_00052021 mRNA downstream 56614 45776377 ~ 45777226 (-) False XLOC_026717
TCONS_00052019 mRNA downstream 472267 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052018 mRNA downstream 506943 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052025 mRNA upstream 1307 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA upstream 2499 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052027 mRNA upstream 199706 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052037 mRNA upstream 533605 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052038 mRNA upstream 544160 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052007 other downstream 1739614 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2967640 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 4521697 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5304061 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5304062 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1351437 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3234062 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3971497 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4260371 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5704433 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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