RNA id: TU2085402


Basic Information

Item Value
RNA id TU2085402
length 1006
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1821925
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1513906 ~ 1515187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgactgagaacacatggttgtatattatttaaaccttattttaccaggtcagttgactgagaacacatggttgtatattatttaaaccttattttaccaggtcagttgactgagaacacatggttgtatattatgtaaaccttattttaccaggtcagttgactgagaacacatggttgtatattatttaaaccttattttaccaggtcagttgactgagaacacatggttgtatattatgtaaaccttattttaccaggtcggttgactgagaacacatggttgtatattatttaaaccttattttaccaggtcggttgactgagaacacatggttgtatattattttaccaggtcagttgactgagaacacatggttgtatattatgtaaaccttattttaccaggtcagttgactgagaacacatggttgtatattatttaaaccttattttaccaggtcggttgactgagaacacattgtcatttacagcaacgacttGGGGAATAGttccaggggagaggagggaaatgaATGAGCCAAAGCTGTTCCCTTCCTCAGTGCAGGAACAGACAGGCCTGATCTATGAATTAGATGTTTCATTCCTCAGTGCAGGAACAGACAGGCCTGATCTATAAATTAGATGTTTCATTCCTCAGTGCAGGAACAGACAGGCCTGATCTATAAATTAGCGGTTCCATTCCTCAGTGCAGGAACAGACAGGCCTGATCTATAAATTAGATGTTCCATTCCTCAGTGCCGGAACAGACAGGCCTGATCTATAAATTAGATGTTTCATTCCTCAGTGCAGGAACAGACAGGCCTGATCTGGTGTCTGTCACATCTCTGCCTGTCCTGAATCCCCTGCCCTGGTTGCTGTAGACCAGtgttccccaaccctggtcctccagtacccccaaccctggtcctcaattacccccaaccctggtcctcaaacatggtcctccagtacccccaacagtgttccccaaccctggtcctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085397 lncRNA downstream 906 1509809 ~ 1513000 (-) True G1821924
TU2085395 lncRNA downstream 11192 1502253 ~ 1502714 (-) True G1821922
TU2085381 lncRNA downstream 23013 1489961 ~ 1490893 (-) True G1821912
TU2085326 lncRNA downstream 133471 1353075 ~ 1380435 (-) False LOC110517589
TU2085329 lncRNA downstream 148324 1353075 ~ 1365582 (-) False LOC110517589
TU2085371 lncRNA upstream 175 1515362 ~ 1515899 (-) True G1821906
TU2085405 lncRNA upstream 18216 1533403 ~ 1533696 (-) True G1821928
TU2085415 lncRNA upstream 51821 1567008 ~ 1567391 (-) True G1821938
TU2085416 lncRNA upstream 52685 1567872 ~ 1568322 (-) True G1821939
TU2085418 lncRNA upstream 60366 1575553 ~ 1575948 (-) True G1821940
XM_036960121.1 mRNA downstream 27294 1352981 ~ 1486612 (-) False LOC110517589
XM_036960122.1 mRNA downstream 27294 1352981 ~ 1486612 (-) False LOC110517589
XM_036960123.1 mRNA downstream 27294 1352981 ~ 1486612 (-) False LOC110517589
XR_005039161.1 mRNA downstream 27294 1352981 ~ 1486612 (-) False LOC110517589
XM_036960822.1 mRNA downstream 169174 1305547 ~ 1344732 (-) True LOC110515341
XM_036960021.1 mRNA upstream 2320 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA upstream 2320 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA upstream 5912 1521099 ~ 1557129 (-) True LOC110515109
XM_036959701.1 mRNA upstream 357514 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA upstream 357514 1872701 ~ 1912670 (-) False LOC110516366
TU2085396 other downstream 465 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 63884 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 281639 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1490422 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1493664 19768 ~ 20242 (-) True G1820878
TU2085536 other upstream 248960 1764147 ~ 1765537 (-) False G1822025
TU2085615 other upstream 373021 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 374144 1889331 ~ 1891148 (-) False G1822081
TU2085613 other upstream 374144 1889331 ~ 1891148 (-) False G1822081
TU2085618 other upstream 374144 1889331 ~ 1890006 (-) False G1822081

Expression Profile