RNA id: TU2085416


Basic Information

Item Value
RNA id TU2085416
length 451
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1821939
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1567872 ~ 1568322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagtcAGTACTGAGTTACCTTCAGACAGTCAGGTCTGGGTTCCCTTCAGACAGTCAgtactgggttaccttcagacagtcagtactgggttaccttcagacagtcAGTACTGAGTTACCTTCAGACAGTCAGTACTGAGTTACCTTCAGACAGTCAGTACTGGGTTCCCTTCAGACAGTCAGTACTGAGTTACCTTCAGACAGTCAGTACTGAGTTACCTTCAGACAGTCAGGTCTGGGTTCCCTTCAGACAGTCAGGTCTGGGTTCCCTTCAGACAGTCAGGTCTGGGTTCCCTTCAGACAGTCAGGTCTGGGCTCCCTTCAGACAGTCAGTACTGAGTTACCTTCAGACAGTCAGGTCTGGGTTCCCTTCAGAAAGTCAGTACTGGGTTCCCTTCAGAGAGTCAgtactgggttaccttcagacagtcAGTACTGAGTTACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085415 lncRNA downstream 481 1567008 ~ 1567391 (-) True G1821938
TU2085405 lncRNA downstream 34176 1533403 ~ 1533696 (-) True G1821928
TU2085371 lncRNA downstream 51973 1515362 ~ 1515899 (-) True G1821906
TU2085402 lncRNA downstream 52685 1513906 ~ 1515187 (-) True G1821925
TU2085397 lncRNA downstream 54872 1509809 ~ 1513000 (-) True G1821924
TU2085418 lncRNA upstream 7231 1575553 ~ 1575948 (-) True G1821940
TU2085423 lncRNA upstream 12017 1580339 ~ 1581054 (-) True G1821943
TU2085428 lncRNA upstream 20894 1589216 ~ 1589496 (-) True G1821948
TU2085429 lncRNA upstream 21606 1589928 ~ 1628063 (-) True G1821949
TU2085448 lncRNA upstream 48172 1616494 ~ 1618150 (-) True G1821963
XM_036960021.1 mRNA downstream 10743 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA downstream 10743 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA downstream 10743 1521099 ~ 1557129 (-) True LOC110515109
XM_036960123.1 mRNA downstream 81260 1352981 ~ 1486612 (-) False LOC110517589
XM_036959701.1 mRNA upstream 304379 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA upstream 304379 1872701 ~ 1912670 (-) False LOC110516366
XR_005039102.1 mRNA upstream 304379 1872701 ~ 1912670 (-) True LOC110516366
XR_005039103.1 mRNA upstream 327961 1896283 ~ 1896581 (-) True LOC118943822
XR_005039152.1 mRNA upstream 680830 2249152 ~ 2249800 (-) False LOC118943847
TU2085396 other downstream 54431 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 117850 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 335605 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1544388 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1547630 19768 ~ 20242 (-) True G1820878
TU2085536 other upstream 195825 1764147 ~ 1765537 (-) False G1822025
TU2085615 other upstream 319886 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 321009 1889331 ~ 1891148 (-) False G1822081
TU2085613 other upstream 321009 1889331 ~ 1891148 (-) False G1822081
TU2085618 other upstream 321009 1889331 ~ 1890006 (-) False G1822081

Expression Profile