RNA id: TU2085535


Basic Information

Item Value
RNA id TU2085535
length 1635
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1822025
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1763993 ~ 1766638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaacactcagttcatttccctttcccacccctccatccttaccaacactcagttcatttccctttcctgcccctccatccttaccaacactcagttcatttccctttcctgcccctccatccttaccaacactcagttcatttccctttcccacccctccatccttaccaacactcagttcatttccctttcccacccctccatccttaccaacactcaaTTAATTTCCCTTTCCtgcccctccatccttaccaacactcagttcatttccctttcctgcccctccatccttaccaacactcagttaatttccctttcccgcccctccatccttaccaacactcagttcatttccctttcccacccctccatccttaccaacactcagttcatttccctttcccacccctccatccttaccaacactcagttcatttccctttcctgcccctccatccttaccaacactcagttcatttccctttcccacccctccatccttaccaacactcagttcatTTCCCTTTGGAATGTTGAGCGGGTTATTCAGCAGGGATTTCTGTTTTGACTCTGACACTAGAAACCAAAAAGAAATGGAGAAAAATGACATTTCTCACCAGGTGATGTATTGACTAATAGCAGTTATAATTTAATTCATTTGAAAGACTAATTAAATGTGTACATATTTTAGATTTAAGAGATGCATCTCAGAACAACAAACTCCATTTATTCGTAACAGAAGTAAACCGCATTCTTACTTTCTTTACAAAATATGCAGTATGTACAAGGACACTTACAAGAAACtatttaaaattaaataaaaagacTAACTGAAATAATATCTATTCAGGGCAAAATGCCTGTTAAAAAGGAGATTTAAAAACCATAACTCCAACTATGAAATGTGATTTCAGATTTGAGACAGAAGTCGTTCTTTAAGCAGAACCTGCAGGTGGACGAGATCATTATTGCTTTTTGAAATGTCTTAGCGGTAGAATCTAAAGCATTTGAAACCAAAAGCGTTCATTTACCCTGAGGAACAAAAACAAGTTGAATTTTGGATGCAAGAAATTGATTTAGCTAATAATGGctgatacaaaaaaaaaacatgattttgggTGTATTTCTTGTCAAAAGATAATATTTAGAGTGTAAATTAACAAAGCTCTCTGTCCTGTACTGGGTTTAAACAATGGACCCATGTTCATGCAGGTCATtttgagagacagggagagagctgaatgcctggcagagacagggagagacagggagagagctgaatgacTGGCAGAGAGCTGAATgactggcagagacaggaagagagctGAAtgcctggcagagacagggagagagtgcaTCCCTGgcattgaccagagccctgtggaaaTAGGACGACATTTGTGACCCAACCAGCGTGATTCTCTGTAGTGTTAAATATTCTCCAATATATTTACAGTAGAAACTAACTCCACCCAGTACTGCATTATGGAGCGATGTAGAGATCTTCCAGGACgtgtcccaaatcacaccctattccctatatagggcactactttagaccagggccctatttcctatatagtgcactactttagaccagggccctattccctatatagtgcactactttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085524 lncRNA downstream 27644 1734669 ~ 1736503 (-) True G1822016
TU2085521 lncRNA downstream 30141 1733687 ~ 1734006 (-) True G1822014
TU2085519 lncRNA downstream 30691 1731254 ~ 1733456 (-) True G1822012
TU2085510 lncRNA downstream 43392 1719389 ~ 1720755 (-) True G1822005
TU2085508 lncRNA downstream 49119 1714719 ~ 1715028 (-) True G1822003
TU2085553 lncRNA upstream 13411 1780049 ~ 1780365 (-) True G1822039
TU2085559 lncRNA upstream 20328 1786966 ~ 1787349 (-) True G1822045
TU2085572 lncRNA upstream 100372 1867010 ~ 1867232 (-) True G1822058
TU2085574 lncRNA upstream 101507 1868145 ~ 1868401 (-) True G1822060
TU2085611 lncRNA upstream 117008 1883646 ~ 1884699 (-) True G1822080
XM_036960021.1 mRNA downstream 207018 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA downstream 207018 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA downstream 207018 1521099 ~ 1557129 (-) True LOC110515109
XM_036960123.1 mRNA downstream 277535 1352981 ~ 1486612 (-) False LOC110517589
XM_036959701.1 mRNA upstream 106063 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA upstream 106063 1872701 ~ 1912670 (-) False LOC110516366
XR_005039102.1 mRNA upstream 106063 1872701 ~ 1912670 (-) True LOC110516366
XR_005039103.1 mRNA upstream 129645 1896283 ~ 1896581 (-) True LOC118943822
XR_005039152.1 mRNA upstream 482514 2249152 ~ 2249800 (-) False LOC118943847
TU2085396 other downstream 250706 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 314125 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 531880 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1740663 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1743905 19768 ~ 20242 (-) True G1820878
TU2085615 other upstream 121570 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 122693 1889331 ~ 1891148 (-) False G1822081
TU2085613 other upstream 122693 1889331 ~ 1891148 (-) False G1822081
TU2085618 other upstream 122693 1889331 ~ 1890006 (-) False G1822081
TU2085917 other upstream 364674 2131312 ~ 2132511 (-) True G1822308

Expression Profile