RNA id: TCONS_00052031


Basic Information

Item Value
RNA id TCONS_00052031
length 636
lncRNA type lincRNA
GC content 0.49
exon number 4
gene id XLOC_026723
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46224589 ~ 46227010 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCGTACATGTTCTGGGTGTCTTGAGGAGCTTGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAACGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTGACAAACAACTGACGAAAGAAGAGAGACCATTCTATAGgggttgccacagcagaatgaaccgccaacttatgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacacccatttacaaTTATATacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtttcaaccactgtgctgccccatgTGCTCTATGCGGaggcctctagagatcgtgacctgtgaagagatgatgccaccatagaggacttctagatgtatccataatcctggaccagaccGTATCATGATCAGATGcagtggtggtcatggagaagtggagagcatgaTACTGATTAATGAAAGACCCCAGCGACAGATGAGTGCCCACATTGATCCTGTGGTCCAGCCTGAAAACCCGCTGGtgccctactcacacctgcagcttctccacgatggacgcc

Function

GO:

id name namespace
GO:0048704 embryonic skeletal system morphogenesis biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052488 lncRNA downstream 7126 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052024 lncRNA downstream 380899 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052487 lncRNA downstream 390217 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052022 lncRNA downstream 446490 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00053102 lncRNA downstream 681148 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00053103 lncRNA upstream 236740 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052040 lncRNA upstream 531766 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00052045 lncRNA upstream 585506 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00053104 lncRNA upstream 904187 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 968893 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00052027 mRNA downstream 109367 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052025 mRNA downstream 376342 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA downstream 376556 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052023 mRNA downstream 401685 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052021 mRNA downstream 447373 45776377 ~ 45777226 (-) False XLOC_026717
TCONS_00052037 mRNA upstream 151460 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052038 mRNA upstream 162015 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052039 mRNA upstream 162020 46387865 ~ 46403778 (-) True XLOC_026725
TCONS_00052041 mRNA upstream 574345 46800190 ~ 46818001 (-) False XLOC_026728
TCONS_00052042 mRNA upstream 575427 46801272 ~ 46817838 (-) False XLOC_026728
TCONS_00052007 other downstream 2130373 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 3358399 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 4912456 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5694820 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5694821 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 969292 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2851917 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3589352 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3878226 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5322288 51548133 ~ 51548250 (-) True XLOC_026779