RNA id: TU2085617


Basic Information

Item Value
RNA id TU2085617
length 474
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1822081
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1888208 ~ 1891148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGCGTCATaaagagagaggaacacatggacACTGCCATCACATTTAACAagtcaaacattcaaatacctgGGATAGAAGGTAAAGTTAAAAACCCAAACCagtccgtgcatcaataccggtatatcgcTAAACACAGTCTACCGCCCAGCCCTACTCAGATCATTCATAGATTCACCTATTCATTGTTTTTATGGCGTTTGCTATTTTTTTATCTTTTTGGTATTTTCTGTGATGTTGTCAAGCTGTGCTGCACACACAACCACTAATGTTCCCTTCATGATAGTACACATCCTGTCTGTTCCCCAGTTCTGTTATGGAAAAGGTTCTGCGTTGTCATAAGCTGTTTGAAAACACGATGATAAACACTGTGAATAGATTCTAGGCATTTAACTTATGTAGTAGTTttacacaaacactccctcagtatgttactgtctatcagaacacaacaacacaaacactccctcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085614 lncRNA downstream 194 1888208 ~ 1890006 (-) False G1822081
TU2085616 lncRNA downstream 1649 1888208 ~ 1888551 (-) False G1822081
TU2085611 lncRNA downstream 5501 1883646 ~ 1884699 (-) True G1822080
TU2085574 lncRNA downstream 21799 1868145 ~ 1868401 (-) True G1822060
TU2085572 lncRNA downstream 22968 1867010 ~ 1867232 (-) True G1822058
TU2085638 lncRNA upstream 23789 1914937 ~ 1923478 (-) True G1822098
TU2085649 lncRNA upstream 40665 1931813 ~ 1932027 (-) True G1822109
TU2085650 lncRNA upstream 41856 1933004 ~ 1933211 (-) True G1822110
TU2085818 lncRNA upstream 49231 1940379 ~ 1940876 (-) True G1822229
TU2085855 lncRNA upstream 134813 2025961 ~ 2026514 (-) False G1822265
XM_036960021.1 mRNA downstream 333071 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA downstream 333071 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA downstream 333071 1521099 ~ 1557129 (-) True LOC110515109
XM_036960123.1 mRNA downstream 403588 1352981 ~ 1486612 (-) False LOC110517589
XR_005039103.1 mRNA upstream 5135 1896283 ~ 1896581 (-) True LOC118943822
XR_005039152.1 mRNA upstream 358004 2249152 ~ 2249800 (-) False LOC118943847
XM_036960034.1 mRNA upstream 359368 2250516 ~ 2255438 (-) False LOC110511972
XM_036960033.1 mRNA upstream 359368 2250516 ~ 2255447 (-) True LOC110511972
XM_021596423.2 mRNA upstream 431816 2322964 ~ 2324578 (-) True LOC110519246
TU2085618 other downstream 194 1889331 ~ 1890006 (-) False G1822081
TU2085536 other downstream 124663 1764147 ~ 1765537 (-) False G1822025
TU2085396 other downstream 376759 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 440178 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 657933 1231836 ~ 1232267 (-) True G1821682
TU2085917 other upstream 240164 2131312 ~ 2132511 (-) True G1822308
TU2085950 other upstream 309437 2200585 ~ 2250217 (-) True G1822333
TU2087107 other upstream 614419 2505567 ~ 2506443 (-) False G1823141
TU2087084 other upstream 622170 2513318 ~ 2516923 (-) True LOC118943899
TU2087372 other upstream 1391985 3283133 ~ 3324789 (-) True LOC118943857

Expression Profile