RNA id: TU2085638


Basic Information

Item Value
RNA id TU2085638
length 679
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1822098
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1914937 ~ 1923478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagtaaccagaccagaacacaatagtacggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaggttacagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaaccagaccagaacacaatagtacggttcatcagtaaccagaccagaacacaatagtatggttcatcagtaggttacagaccagaacacaatagtacggttcatcagtaaccagacaCTTTGTTTTTGTGATTGTAGTAATCACCATGATAAAAAGTTATTCTTGATCTACTCTACTGCGTATATCATAATAGTTTCTAAACCCCATGATACGGATCAATATCTCAAATGGATTTGTTGTTGGACTTTGTACGGTTTTGTATAAAAGAGAATACTTTATAGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085617 lncRNA downstream 23789 1890200 ~ 1891148 (-) True G1822081
TU2085614 lncRNA downstream 24931 1888208 ~ 1890006 (-) False G1822081
TU2085616 lncRNA downstream 26386 1888208 ~ 1888551 (-) False G1822081
TU2085611 lncRNA downstream 30238 1883646 ~ 1884699 (-) True G1822080
TU2085574 lncRNA downstream 46536 1868145 ~ 1868401 (-) True G1822060
TU2085649 lncRNA upstream 8335 1931813 ~ 1932027 (-) True G1822109
TU2085650 lncRNA upstream 9526 1933004 ~ 1933211 (-) True G1822110
TU2085818 lncRNA upstream 16901 1940379 ~ 1940876 (-) True G1822229
TU2085855 lncRNA upstream 102483 2025961 ~ 2026514 (-) False G1822265
TU2085856 lncRNA upstream 102483 2025961 ~ 2027128 (-) True G1822265
XM_036959701.1 mRNA downstream 2267 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA downstream 2267 1872701 ~ 1912670 (-) False LOC110516366
XR_005039102.1 mRNA downstream 2267 1872701 ~ 1912670 (-) True LOC110516366
XR_005039103.1 mRNA downstream 18356 1896283 ~ 1896581 (-) True LOC118943822
XM_036960021.1 mRNA downstream 357808 1517507 ~ 1557129 (-) False LOC110515109
XR_005039152.1 mRNA upstream 325674 2249152 ~ 2249800 (-) False LOC118943847
XM_036960034.1 mRNA upstream 327038 2250516 ~ 2255438 (-) False LOC110511972
XM_036960033.1 mRNA upstream 327038 2250516 ~ 2255447 (-) True LOC110511972
XM_021596423.2 mRNA upstream 399486 2322964 ~ 2324578 (-) True LOC110519246
XM_036960207.1 mRNA upstream 464543 2388021 ~ 2493351 (-) True LOC118943863
TU2085615 other downstream 23789 1888208 ~ 1891148 (-) False G1822081
TU2085612 other downstream 23789 1889331 ~ 1891148 (-) False G1822081
TU2085613 other downstream 23789 1889331 ~ 1891148 (-) False G1822081
TU2085618 other downstream 24931 1889331 ~ 1890006 (-) False G1822081
TU2085536 other downstream 149400 1764147 ~ 1765537 (-) False G1822025
TU2085917 other upstream 207834 2131312 ~ 2132511 (-) True G1822308
TU2085950 other upstream 277107 2200585 ~ 2250217 (-) True G1822333
TU2087107 other upstream 582089 2505567 ~ 2506443 (-) False G1823141
TU2087084 other upstream 589840 2513318 ~ 2516923 (-) True LOC118943899
TU2087372 other upstream 1359655 3283133 ~ 3324789 (-) True LOC118943857

Expression Profile