RNA id: TCONS_00052038


Basic Information

Item Value
RNA id TCONS_00052038
length 1991
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_026725
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46387860 ~ 46410387 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGTTATTGGAAAACTGGGGCCACAACCGTGAACGTGCGAGCTAGAAATCCTCGAAAAGTTGTCAAACCTGATATTTTGATAAACGCCGTGGATACAAAAGAAACGCAGTGATTCGTCTCGTGAGGGAAACGTCGCTTCTCTGGCCTCCTTTCAGGGACTCATCATGTCCAGTGACCCTCCTCCTCCATACCCCGGGGGCCCCAATGCTCCGCTCCTCGAGGAGAAGAACGGACAACCTCTGCATTCTGCAGGCACTGCTCCAGTAATGACTGGACCTCCTCAAGGACACCCTCTGCCTCCAGAATATGGACCTCCACCTTATGAAGCCACACAGCAACCTGGCTTCGTCCCTCCACACGTCCCAGGCGAAGGCCCCATCCCGAAGCCAATGCATATGCCAATGCCTATGCCTCATCCTCATGGTGGTTACTATCCTCCCCTTGGGCACTTTCCTCATACGATGGGCGAGTATGCTGGTCCAGGGCCCAGTCACTTTGCTCCAGGGCACACAGCCACAGTTCTGGCTCCTCCAGGTGCCGCCACCACCACCGTGACTGTCCTACAGGGGGAGATGTTTCAGTCGGCTCCAGTGCAGACGGTTTGCCCACACTGCCAACAGCCCATCATTACCCGCATCAGCCATGACATCGGCCTCATGAACACACTTGTCTGCATGTTCTGCTTCTTTGTCGGTTGCGACCTAGGTTGCTGCTTGATCCCCTGCTTGATCGACGACCTCAAGGACGTGACGCACACCTGCCCGAACTGCAAGGGCTATATTTACACATACAAGCGCATATGCTAACAGTTTATCCCGTCAACAAATGTGCTGCAACCTGATGTTGGTGGGTGTCGGCGACTCACTTTCATTTCCGTCCGCTCCGTTTTCACTTTCCCCCTACCTGACAGCTCATATTTCTAGCCATTGCTCAGTTTATGTGACCGCATTTAATTTACAGGCACATTTTATAGTTACAGATGCACGTCAAATGAAGAATTCACTCGAGAAGGCACATTTTATATGCACGATGGTCAGGGTTACATCAAAgcactattttgttttttatttattattttagcagtgAAGTGTATATGTGAAAGGGAATATGTGAAAAGAGGCTTGCGTAACAAAACTAGGTGAGTTTCATTCAGGGTCAGTATTGCTGGATTCTTATTTTAtgcattatagttttattttaaccttaaaatggaaTTTTTTCATAGCTGGTTTTAAAGACATCGCTCTTacctgtgtgtctctgtgtgtggcattttatgcaaatgttatggaaatgtattttccttttttagttttaatttcaatCTCTTGTCTGGATTTGATATGCTTGTATATGTAACATGCATTGTTGTGCAGACGTGTCATTTCTAGATGAAGGGTTTCTATTTATAAGGCATATATACAGTAATGTATGccaatccagcctgatctcacgagaaaacgttcGTATTTTACGttctgtcagtttagtggctaattcatatgagttcTTTCCTATTaaatatacgattttaaaaaggaggtgtggcacccaaccccgcctctaaacccaatcgtcattgggtgatgagcaaatcgtactaaattgtacgaattagatcgtataaattcatacgaattaagctgcggtcacccttgagtttgagtttgcgaaattctgtcgtatggtgctgtgaaaagggccgggattaaacaagatgattagacattttaaaaaatgcaagcgATTGGTCCGtatttaagatttctgtccagagaggtcatgttttggtcctcgattggtctcacgcaatcaagtgatgcgatttcaaggtcagagttcacaaagcttgaactttgcaacgcagtgacTTGCGAAACTTCATGCACGAACTTGCGTTTTCGGTCTGATGCGTTtccgtgtgtatgaatggaagtctatggggagagaagtccagtgtgaccgcagctttagccactaaatgaaaaa

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070720-18 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Orthologous to human CDIP1 (cell death inducing p53 target 1).

Ensembl:

ensembl_id ENSDART00000156822

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052034 lncRNA downstream 160850 46224721 ~ 46227010 (-) False XLOC_026723
TCONS_00052032 lncRNA downstream 160852 46224602 ~ 46227008 (-) False XLOC_026723
TCONS_00052033 lncRNA downstream 160854 46224681 ~ 46227006 (-) False XLOC_026723
TCONS_00052029 lncRNA downstream 160862 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00053103 lncRNA upstream 52198 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052040 lncRNA upstream 347224 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00052045 lncRNA upstream 400964 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00053104 lncRNA upstream 719645 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 784351 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00052037 mRNA downstream 7960 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052027 mRNA downstream 272628 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052025 mRNA downstream 539603 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA downstream 539817 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052023 mRNA downstream 564946 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052041 mRNA upstream 389803 46800190 ~ 46818001 (-) False XLOC_026728
TCONS_00052042 mRNA upstream 390885 46801272 ~ 46817838 (-) False XLOC_026728
TCONS_00052043 mRNA upstream 392611 46802998 ~ 46817499 (-) False XLOC_026728
TCONS_00052044 mRNA upstream 392956 46803343 ~ 46811611 (-) False XLOC_026728
TCONS_00052046 mRNA upstream 509135 46919522 ~ 47036951 (-) False XLOC_026729
TCONS_00052007 other downstream 2293634 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 3521660 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5075717 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5858081 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5858082 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 784750 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2667375 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3404810 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3693684 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 5137746 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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