RNA id: TCONS_00052040


Basic Information

Item Value
RNA id TCONS_00052040
length 514
lncRNA type antisense
GC content 0.54
exon number 2
gene id XLOC_026727
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46757611 ~ 46762706 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAACACCTGACGAACGCGGCTGTGCTTCCTGTGCTCCGTGCCCCAGCCTTAGTCTCCTCGGTGGGTGAGTGTCCGCAGGTGGAGCCGGTCTCCATCCACGGCCGGAGTGTTGAGGAATATCAGCAAATCTACAACAGTGTGATGGGCTCCACCATCCAGAAGAGACGTCGTGGCCGGTACAACCTACAACAAGGTCTCgagatcaagcagcggctgtgggagaagCTGGGCCGGCCTGCACTCCTGGAAACCGTGCAGCCTGATGGACGAGTGTTCATCACAGAGGTCAGATCCAAGTCCAGCGTTGCTCCTCAAATCACGGTGGACATCAGTGAGGAGCCACTGCCCAAGGAGCCCCCAAGGAAGAAGCCCAGGCACTGAGTCATCCTAGTGCCAGATGAAAGATCATGGGCACTAATGCTGGTTATTAAAGGATACAGAAGGACAGACGTGACGCTATACATCTACATGAAAGAGTCATAAGGATAGATTATGAAAGCTGTATGCTGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053103 lncRNA downstream 294355 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052034 lncRNA downstream 530601 46224721 ~ 46227010 (-) False XLOC_026723
TCONS_00052032 lncRNA downstream 530603 46224602 ~ 46227008 (-) False XLOC_026723
TCONS_00052033 lncRNA downstream 530605 46224681 ~ 46227006 (-) False XLOC_026723
TCONS_00052029 lncRNA downstream 530613 46224597 ~ 46226998 (-) False XLOC_026723
TCONS_00052045 lncRNA upstream 48645 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00053104 lncRNA upstream 367326 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 432032 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053105 lncRNA upstream 1064496 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00053106 lncRNA upstream 1560834 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00052038 mRNA downstream 347224 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052039 mRNA downstream 353833 46387865 ~ 46403778 (-) True XLOC_026725
TCONS_00052037 mRNA downstream 377711 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052027 mRNA downstream 642379 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052025 mRNA downstream 909354 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052041 mRNA upstream 37484 46800190 ~ 46818001 (-) False XLOC_026728
TCONS_00052042 mRNA upstream 38566 46801272 ~ 46817838 (-) False XLOC_026728
TCONS_00052043 mRNA upstream 40292 46802998 ~ 46817499 (-) False XLOC_026728
TCONS_00052044 mRNA upstream 40637 46803343 ~ 46811611 (-) False XLOC_026728
TCONS_00052046 mRNA upstream 156816 46919522 ~ 47036951 (-) False XLOC_026729
TCONS_00052007 other downstream 2663385 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 3891411 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5445468 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 6227832 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 6227833 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 432431 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2315056 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 3052491 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3341365 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 4785427 51548133 ~ 51548250 (-) True XLOC_026779