RNA id: TU2086366



Basic Information


Item Value
RNA id TU2086366
length 515
lncRNA type intronic
GC content 0.33
exon number 3
gene id G1822610
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2755217 ~ 2761850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agggatgttactgtagtagatatgaacattaacagggatgttactgtagtagatatgaatagggatgttactgtagtagatattaatagggatgttactgtagtagatattaacagggatgttactgtagtagatatgaacattaatagggatgttactgtagtagatatgaatagggatgttactgtagtagatatgaacatgaatagggatgttactgtagtagatatgaacattaacagggatgtgaCTAGTAGATattaatagggatgttactgtagtagatatgaacagggatgttactgtagtagatatgaacagggatgttactgtagtagatatgaatagggatgttactgtagtagatatgaacattaacagggatgttactgtagtagatatgaacagggatgttactgtagtatatatgaatagggatgttactgtagtagatatgaacagggatgttactgtagtatatatgaatagggatgttactgtagtagatatgaaca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2086297 lncRNA upstream 14836 2649179 ~ 2742612 (+) True G1822564
TU2086267 lncRNA upstream 18648 2737224 ~ 2738800 (+) False G1822563
TU2086270 lncRNA upstream 18648 2737224 ~ 2738800 (+) False G1822563
TU2086276 lncRNA upstream 18648 2737224 ~ 2738800 (+) False G1822563
TU2086277 lncRNA upstream 18648 2737224 ~ 2738800 (+) False G1822563
TU2086408 lncRNA downstream 89402 2849975 ~ 2851034 (+) False G1822637
TU2086407 lncRNA downstream 90167 2850740 ~ 2851034 (+) False G1822637
TU2086405 lncRNA downstream 90556 2851129 ~ 2851713 (+) True G1822637
TU2086412 lncRNA downstream 100587 2861160 ~ 2862447 (+) True G1822640
TU2086415 lncRNA downstream 143441 2904014 ~ 2905911 (+) False G1822642
XR_005039130.1 mRNA upstream 110103 2579443 ~ 2647345 (+) False LOC110514481
XR_005039181.1 mRNA downstream 155406 2915979 ~ 2917430 (+) True LOC118943875
XM_036959682.1 mRNA downstream 214963 2975536 ~ 2990707 (+) False LOC110514011
XM_036960173.1 mRNA downstream 257889 3018462 ~ 3021528 (+) False LOC110518873
XM_036960172.1 mRNA downstream 257890 3018463 ~ 3021528 (+) False LOC110518873
XM_036960174.1 mRNA downstream 257891 3018464 ~ 3021528 (+) True LOC110518873
TU2086207 other upstream 176634 2577118 ~ 2580814 (+) True LOC110514481
TU2085671 other upstream 623259 2131723 ~ 2134189 (+) False LOC110512159
TU2085573 other upstream 888941 1868008 ~ 1868507 (+) True G1822059
TU2085020 other upstream 1448144 1306706 ~ 1309304 (+) True G1821637
TU2084973 other upstream 1597596 1136543 ~ 1159852 (+) True LOC110516888
TU2086302 other downstream 82381 2842954 ~ 2873356 (+) True LOC110510594
TU2086558 other downstream 497635 3258208 ~ 3269559 (+) True G1822758
TU2086579 other downstream 519119 3279692 ~ 3280453 (+) True G1822769
TU2086796 other downstream 988131 3748704 ~ 3749129 (+) True G1822927
TU2086924 other downstream 1032399 3792972 ~ 3797118 (+) True G1823015

Expression Profile


TU2086366 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU2086366 Expression in each Bioproject

Bar chart with 14 bars.
TU2086366 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.