RNA id: TCONS_00052045


Basic Information

Item Value
RNA id TCONS_00052045
length 863
lncRNA type retained_intron
GC content 0.48
exon number 3
gene id XLOC_026728
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46800190 ~ 46818001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGGAGCCTGCGAGGAGCTGGGaaatacacacacaacagcagaACCACAACACCCTCCCCTGGACACACCCTACTGGGGATcactgcttttctttttttctgaaccATCGCCCACGCCACACGGAGAGAAATCTCTCTCTCATCATCATCCTGAAGAAAACCCCCTTATCCTCATTTTCACACTGCTGAGGAAAACCTACAATCGCACGGGCTGAGATTTCCTGGCGAAGACTGtcctttttcctttttctttttttttcttttcctttggaAACTGACATTTGCATTTCTCCATTCCAAGCCACGGCGTAATAATATCTGCAATCCAGCCTGAAGACCTGCAAATCGAAGGACCTAGATCACTATCATCTTTGTACGTCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGCGCCACAGATGACAGCAAAACTAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAAGAGTTCAAGAGCCTCTTTGGCAGCATCGGGGAAATCGAGTCCTGCAAATTGGTCAGAGACAAGATCACAGGCCAGAGCTTGGGATATGGCTTTGTAAACTATGTGGATCCCAACGACGCCGACAAGGCTATCAACACGCTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGGTAAGAGATCTTCAATCACTCGATGGAGAGGAAGTAGGGAATAAAGCAGAGCCCAAGACAGACATGACAGCAGGAGGGGAGGAGAAGAGGGTGGAGAAGGGGAGGAATCTCAGCGGTGGAGACAAAAGCAGCAAAAGAAAGCAGAAA

Function

GO:

id name namespace
GO:0050767 regulation of neurogenesis biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-76 Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).

Ensembl:

ensembl_id ENSDART00000133036

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052040 lncRNA downstream 48645 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00053103 lncRNA downstream 348095 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00052034 lncRNA downstream 584341 46224721 ~ 46227010 (-) False XLOC_026723
TCONS_00052033 lncRNA downstream 584345 46224681 ~ 46227006 (-) False XLOC_026723
TCONS_00053104 lncRNA upstream 312176 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052489 lncRNA upstream 376882 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053105 lncRNA upstream 1009346 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00053106 lncRNA upstream 1505684 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053108 lncRNA upstream 1643641 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00052038 mRNA downstream 400964 46387860 ~ 46410387 (-) False XLOC_026725
TCONS_00052039 mRNA downstream 407573 46387865 ~ 46403778 (-) True XLOC_026725
TCONS_00052037 mRNA downstream 431451 46377305 ~ 46379900 (-) True XLOC_026724
TCONS_00052027 mRNA downstream 696119 46043406 ~ 46115232 (-) True XLOC_026721
TCONS_00052025 mRNA downstream 963094 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052046 mRNA upstream 101666 46919522 ~ 47036951 (-) False XLOC_026729
TCONS_00052049 mRNA upstream 101666 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052048 mRNA upstream 101666 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052047 mRNA upstream 101666 46919522 ~ 47105267 (-) False XLOC_026729
TCONS_00052050 mRNA upstream 102781 46920637 ~ 47035746 (-) False XLOC_026729
TCONS_00052007 other downstream 2717125 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 3945151 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 5499208 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 6281572 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 6281573 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 377281 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 2259906 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 2997341 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 3286215 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 4730277 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

//