RNA id: TU2087528


Basic Information

Item Value
RNA id TU2087528
length 1117
lncRNA type intronic
GC content 0.40
exon number 5
gene id G1823478
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3341673 ~ 3344235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTAGTCACAACAAGAGGAGATATGTAATATAGTCACATCAACAAGAGAGAGGtaatgtagtcacatcaacaagagagaggtaatgtagtcacatcaacaagaggagagaggtaatgtagtcacatcaacaagagagaggtaatgtagtcacatcaacaagagagaggtaatatagtcacatcaacaagaggagagaggtaatgtagtcacatcaacaagaggagagaggtaatgtaGCAACAACAAGAGGAGAGTGGTAATGTAGTCACAACAAGAGAGAGCTAATGTAGTCACAACAAGAGAGTGGTAATGTAGTCACAACAAGAGGAGAGCGGTAATGTAGTCACAACAAGAGGAGAGCGGTAATGTAGTCACAACAAGAGGAGTGGTAATGTAGTCACAACAAGAGAGCGGTCATGTAGTCACATCAACATGAGGAGAGAGGTTAATGTAGTCACAACAAGAGAGAGGTAATGTAGCTACATCAACTACAGGTGCGAGAAGTAGAGGGAGGTAATGTAGCTACATCAACAAGAGAAGAAGCAATGTAGCTACATCAACAAGAAGCGAGGTAGAGGTTATTGAGCTTCATCAACAAGAGTAGAGTGGGGTAATGTAGCTACATCAACAAGAGTCGTGAGAAGTAGAGGTAATGTAGCTACACCAACAAGAGAGAAGTAGACATAATGTAGCTACATCAACAAGAGagagtagagataggTAATGTAGCTACATCAAcaagagagagaagtagaggtaATGTAGCTACATCAAGAATAGAAAGGTAATGTAGCTAAATCAACAAGAAGAGATATAATGAGAGGTAATGTAGCTACATCAACAAGAGGAGAGATACATAGGGGTAATGTAGCAACATCAACGATAGAGGTAATGTAGATACACCAACAAGAAAAGATAAGTAGAGAGGTAATGTAGCTATAGCAACAGGAAGAGAGCGACGTAGAGGTAATGTAGATACATCAACAAGAGGTGTGATAAGTAGAGAGAGGTAATGTAGCTACatcaacaggaagagagagaagtagagaggtaatgTAGCTTCACCAAcaagagagagaagtagagagaggtaaTGTAGCTACATCAAcaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2087498 lncRNA downstream 72111 3258971 ~ 3269562 (-) True G1823451
TU2087500 lncRNA downstream 75707 3256745 ~ 3265966 (-) True G1823453
TU2087497 lncRNA downstream 88229 3253133 ~ 3253444 (-) True G1823450
TU2087495 lncRNA downstream 90569 3248721 ~ 3251104 (-) True G1823449
TU2087491 lncRNA downstream 113347 3227872 ~ 3228326 (-) True G1823445
TU2087537 lncRNA upstream 18448 3362683 ~ 3363028 (-) True G1823485
TU2087541 lncRNA upstream 24302 3368537 ~ 3369334 (-) True G1823488
TU2087560 lncRNA upstream 58972 3403207 ~ 3403568 (-) True G1823501
TU2087565 lncRNA upstream 80133 3424368 ~ 3425279 (-) True LOC118943858
TU2087571 lncRNA upstream 95742 3439977 ~ 3544859 (-) True G1823511
XM_036960125.1 mRNA downstream 16649 3281355 ~ 3325024 (-) False LOC118943857
trnav-uac-97 mRNA downstream 101713 3239888 ~ 3239960 (-) True trnav-uac-97
trnav-uac-96 mRNA downstream 102791 3238810 ~ 3238882 (-) True trnav-uac-96
trnav-uac-95 mRNA downstream 106860 3234741 ~ 3234813 (-) True trnav-uac-95
trnav-uac-94 mRNA downstream 107722 3233879 ~ 3233951 (-) True trnav-uac-94
XR_005039162.1 mRNA upstream 80212 3424447 ~ 3424850 (-) False LOC118943858
XR_005039264.1 mRNA upstream 195380 3539615 ~ 3541320 (-) True LOC118943909
XM_036960845.1 mRNA upstream 211748 3555983 ~ 3601859 (-) False LOC118943921
XM_036959764.1 mRNA upstream 341372 3685607 ~ 3691873 (-) False LOC118936584
XM_036959765.1 mRNA upstream 341372 3685607 ~ 3691873 (-) False LOC118936584
TU2087372 other downstream 16884 3283133 ~ 3324789 (-) True LOC118943857
TU2087084 other downstream 824750 2513318 ~ 2516923 (-) True LOC118943899
TU2087107 other downstream 835230 2505567 ~ 2506443 (-) False G1823141
TU2085950 other downstream 1091456 2200585 ~ 2250217 (-) True G1822333
TU2085917 other downstream 1209162 2131312 ~ 2132511 (-) True G1822308
TU2087596 other upstream 161342 3505577 ~ 3506272 (-) True G1823530
TU2087616 other upstream 210778 3555013 ~ 3557825 (-) False LOC118943921
TU2087759 other upstream 446796 3791031 ~ 3793267 (-) False LOC118943842
TU2087757 other upstream 449088 3793323 ~ 3800554 (-) True LOC118943842
TU2087821 other upstream 500258 3844493 ~ 3846920 (-) True G1823691

Expression Profile