RNA id: TU2087842


Basic Information

Item Value
RNA id TU2087842
length 1556
RNA type TUCP
GC content 0.49
exon number 2
gene id G1823705
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3903721 ~ 3906049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactatactgtactctactgtcctctactgtactgtgctcttctgtcctctactgtactgtgctctactgtcctctactgtactgtgctcttctctactctactgtactgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctcctccacgctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccacgtgtcctctcctctactctgcattacccatgtgtcctctcctccacgctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctcctctactctgcatTACCaatgtgtcctctcctctactctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctcttctctcctctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctcctctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctactctacgctgcattacccatgtgtcctctactctactctgcattacccatgtgttctctactctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctactctactctacattacccatgtgtcctctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctactctactctgcattacccatgtgtcctctactctactctgcattacccatgtgttctctactctactctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctactctactctacattacccatgtgtcctctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctcctctactctgcattacccatgtgtcctctcctctacgctgcattacccatgtgtcctctactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2087763 lncRNA downstream 22004 3878206 ~ 3881717 (-) True G1823642
TU2087835 lncRNA downstream 29743 3873475 ~ 3873978 (-) True G1823699
TU2087830 lncRNA downstream 43900 3859573 ~ 3859821 (-) True G1823694
TU2087807 lncRNA downstream 71164 3831900 ~ 3832557 (-) True G1823683
TU2087804 lncRNA downstream 80298 3823150 ~ 3823423 (-) True G1823680
TU2087855 lncRNA upstream 43122 3948438 ~ 3948665 (-) True G1823717
TU2087863 lncRNA upstream 85325 3990641 ~ 3991228 (-) True G1823724
TU2087864 lncRNA upstream 85988 3991304 ~ 3991819 (-) True G1823725
TU2087877 lncRNA upstream 97551 4002867 ~ 4004002 (-) False LOC118943848
TU2087878 lncRNA upstream 97551 4002867 ~ 4004002 (-) True LOC118943848
XM_036960901.1 mRNA downstream 8210 3868056 ~ 3895511 (-) True rel
XM_036959995.1 mRNA downstream 73504 3821289 ~ 3830217 (-) True LOC118936586
XM_036959994.1 mRNA downstream 73784 3821289 ~ 3829937 (-) False LOC118936586
XM_036959955.1 mRNA downstream 83019 3791039 ~ 3820702 (-) False LOC118943842
XM_036960823.1 mRNA upstream 20005 3925321 ~ 3937927 (-) True LOC110532916
XM_036960586.1 mRNA upstream 45474 3950790 ~ 3974808 (-) False LOC110510589
XM_036960587.1 mRNA upstream 45474 3950790 ~ 3974808 (-) False LOC110510589
XM_036960588.1 mRNA upstream 45474 3950790 ~ 3974808 (-) False LOC110510589
XM_036960589.1 mRNA upstream 45474 3950790 ~ 3974808 (-) False LOC110510589
TU2087821 other downstream 56801 3844493 ~ 3846920 (-) True G1823691
TU2087757 other downstream 103167 3793323 ~ 3800554 (-) True LOC118943842
TU2087759 other downstream 110454 3791031 ~ 3793267 (-) False LOC118943842
TU2087616 other downstream 345896 3555013 ~ 3557825 (-) False LOC118943921
TU2087596 other downstream 397449 3505577 ~ 3506272 (-) True G1823530
TU2087847 other upstream 28577 3933893 ~ 3936043 (-) True G1823710
TU2088350 other upstream 756275 4661591 ~ 4662234 (-) True G1824125
TU2088833 other upstream 900148 4805464 ~ 4820448 (-) False G1824416
TU2088840 other upstream 900148 4805464 ~ 4820448 (-) False G1824416
TU2088845 other upstream 900148 4805464 ~ 4820448 (-) True G1824416

Expression Profile