RNA id: TCONS_00053105


Basic Information

Item Value
RNA id TCONS_00053105
length 503
lncRNA type intronic
GC content 0.27
exon number 2
gene id XLOC_026736
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47827202 ~ 47833114 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGGTTTTTGTACTTAACTtttctgttgaatgcttgattctgattagctgtgaaaatctttaataatattcattttagttgataattgttttaataaattattgtcatgggtattaaatatatttaattcaatgatatttatttgataaattacTCTGGGTAAAAGCTATTGTTTCATATCATTACGCtgaattatttcaattattttacaGCCTGCAGTTGTCAAATAACAAATCAAGGCTTTAAATGAtgtgcGTAAGAAACTAGTACTGCACAAAGGAGCAGTTTAAGGGCAAAAACCTGACAAACGTCATAAAATATGGAGTATGAACAGAAAAATTGGACTTAATAGAAAATAATGAacttaaataatgcatttttacttATAATTTAAAGGCCCATTCTCAATAACTTCTCACATATATACCTAAAAATAcactattaaataaacaaaaaagtacatattGCTGTTGTCTGTTGCTGTTGTTATTGcaaaagct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052489 lncRNA downstream 630242 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053104 lncRNA downstream 696091 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052045 lncRNA downstream 1009346 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00052040 lncRNA downstream 1064496 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00053103 lncRNA downstream 1363946 46462585 ~ 46463256 (-) True XLOC_026726
TCONS_00053106 lncRNA upstream 490426 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053108 lncRNA upstream 628383 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00053107 lncRNA upstream 628383 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00053110 lncRNA upstream 628383 48461497 ~ 48469108 (-) False XLOC_026739
TCONS_00053109 lncRNA upstream 628383 48461497 ~ 48469108 (-) False XLOC_026739
TCONS_00052057 mRNA downstream 532837 47281236 ~ 47294365 (-) True XLOC_026734
TCONS_00052056 mRNA downstream 591205 47222096 ~ 47235997 (-) True XLOC_026733
TCONS_00052054 mRNA downstream 699106 47114328 ~ 47128096 (-) True XLOC_026730
TCONS_00052051 mRNA downstream 721935 46920637 ~ 47105267 (-) False XLOC_026729
TCONS_00052053 mRNA downstream 721935 47005704 ~ 47105267 (-) True XLOC_026729
TCONS_00052060 mRNA upstream 420088 48253202 ~ 48259289 (-) True XLOC_026737
TCONS_00052063 mRNA upstream 716180 48549294 ~ 48559906 (-) True XLOC_026740
TCONS_00052064 mRNA upstream 751570 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA upstream 754041 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052066 mRNA upstream 805480 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052055 other downstream 631968 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 3732976 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 4961002 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 6515059 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 7297423 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 1244648 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 1982083 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 2270957 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 3715019 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 4074372 51907486 ~ 51907562 (-) True XLOC_026783

Expression Profile

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