RNA id: TCONS_00052060


Basic Information

Item Value
RNA id TCONS_00052060
length 4932
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_026737
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48253202 ~ 48259289 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGctgaaaacttaaatattaaagtcattttttattagattaattTTTGTATAaagcctgtatatatatatatacatacatacatacacacacacacacacacacacacacacacacacacacaaatgtatgtATTGGATGTATTGAAACGTGGTACATAAAAAGTGTTGCAAACAAATAGATACACATAattacactaaaaataaatactttttttggaAAGATATTACAAGGAACAATTTTCCTAAAATGTTGGTGGGGCCAAAATGAACAGTATTCACAGTTTATGATTCATGCTGTATATGCAGTGAGtactgtattgtgaataaatgtgaatgtatttcaaaataaaactaaCCCCATTTGTGAAAACTACGATCCGGATCCAGCATAAATAACTGCAAGCTCAGAACAAGAATTTTCATAATCACTCTGAAAGACACTTCACATCAAGCGCAGCACACATGCAAATCTCACTGGTTGTCCTGAATATTTCCACACCCCTCTGACAACATCCTCAAACCTGCTTCACACCTAACTCCACCACTCCTGAGCTAATTCAACCATTTAGGCAAACAAAAGGCGCAAACAGTCTTGTCTGGATTTTAAAGTCCATGTGGATTGTCACAAGCAGGTGAGACAAGGAGGCAAACTAGCAGCGTATCGTGGCTTGGGGCTTGCCTAATAGCAGGCGCATTGATGCTGCCTCAGGGCTCTACTGCTTGGGCACAGACTCCACCCCACAGAGTCAACACCTAAGAGAGAAAGCGAGAGGCTCATCAGACTCATCAGAATCTAGACGGAGCACCTAAACGAACAGACAGTCGATTTCGAGGACAAGCACGCCAGACAAACTCTTCCACTTCAGAGACTTCTGGATGACCACTGTGGATCTACATCCATCAATGATACATCCAATATCGTGAACGTGGAATCTGACAACAGATAGGACTGACAAACCACGCAGCACTGGATTTGAACAACTGCACCACTATGGAAACCCTTCAGGGCAGAAAACCGAAGAAACCCCATTACATTCCTCGTCCTCCTGGCAAGCCTTTTAAATATCAGTGTTTCCAATGTCCATTCACCTGCAACATCAAGTCTCACCTCTTCAACCACATGAAGTATAATCTGTGCAAGAACTCCATCTCTCTAGTGTCTCAGCGCATGGAACAGACAGGGAAAGCATCCAGAGCTTCCCAGCATAGCCCAGCTTTCAGTCACAACAGCAAAGAGCTACCACTGGATGCTGAATCAACCAAACCTATAGAAAATGTCAAGATTGAGAAAGCGGTGACTAAGGAAGCAAGAGAAAAGCCTCAAAGTCCCATCAAGGAGGTCAGTAAAGATGACACTGAGCCAGCTCTTGAGGCCAAGGACAAAAGTGAAGACATGGACATTGCACAGAACAAAATATCTTCGGCCTTCTCGCCAGTTGCACGAACATGCGAAAGTGAAGCTCTTTCTTTGTCTCCACATAAGGATGATCAATCAACCATTCCTCACTTCTACCAACAAATTGCACCTTGGGTAACATCTGCTTCCTCAGCACATCTTCTTCCTCCAATACCAGAATATCCTCCATACATGGTGCCCGAAAGGTCCTTGCCTCCCCTCTACGCACCCTACCCACATAACCAAGCAAGCACTCCAGCCTACCAAGTAACACCTCGAGAGACCCAGAGACCACTAGTGCCGTCACCTTTGATCCCACCTAATTCTTCCCTTCTCCACCCTTATCACTACAGATATGGTCACTCTATTTTCCCCAGTCCACCTCTACCCTACAGCTTCTATCAGCATCCTGAACTCTCTATACCCTTACAGAGATCAAGGTATCTTCCTCTGGATGTGTACAGTAGCAGATTTTATCCTCGAGAGTATGGAGGGCACCTGGTCCCCCTAACGCATCCTGAATCTTACAGCAGGCTTGCTGAGGATAGGGCAGTCCAGGAGCATAATACAGGAGACAAAGGTATTCGCGAGAGTCCTTTAGAAGGATGTGATGCCTCTGGGTCTCCAGACAGGCCCAGTACTGCAGATGTCACCCAGCGTATCCCTGTTGGACTCAGACTTGCTTCCCATGGGGAGTCTCACTCAGGCAGCCAATCGCATATCATATCAGGGTCGACTAAAGCAAATGATAACTTACCCAAAATGCCATGTGGACAAAATCAAGAGAAAATGTTACAAAAGACAGAAAGGTATGATTCACAAACCACAATTTCCTCAAGAAGCAGTGACATTTCAGACAAGGAAGAGGATGAAGAAACCGAAGAGGAGATAGGTCCTCTTAACCTTTCAAAAAGGGACCAGGCCACATCCAACAACATGACACATCATCACTATCCTGACCGAGAACTGCATTATGATTCAGAAAGTAGTCAAGAAGAGGCTCCGCTCAACCTCTGCCTCAGGGTACAGTCCAGCAACCAAGCCTTGCCCAACACCTCTGAAACTCCGGAAAAAGAAACCATCAGCAATGCTGAAGTATCCACAACTGAGTCACCCCAGGATCTAGAACCATGTGACCAAAGGCAGACAGCAGCGTTTGCTTTATGCCAGTTAGCTAGCTCAAGGGACATCATCAATGACACTTCTGTTAAGCAACAAGATGTGACCGAGAGTCAGAACACTAAGTGTCTTCCTTCTCCTGACAACTGCTCAGTCAAAGACAGTCCTAACATACTCAATGCAAGCATGGTGGCATTGGGACAAAAAAGGGCAAATAATAGACCCTTAAGACACACTAACAAACGAGCAAAGGTTAAAGAACCATCCCGTCCACGAAGAAAAAGGTCACAAAACTGCTGATGAAGAGTAGTTAAACAGTGGACTGCTGCAATTCAGATGGTTGAAAGAAAAGCGGTCCAGTGAAAACATCAACATTAAAGAAAGACTTTGCAGAAATATGACCAGCAGCTACCATCAAGTCTTgaattattatagtatttatggCCGTAAAATAACTTACTTATGAATTTTAAAGTTATGATTGAACTGATAATGTATACGTTCAATGTAAGATactttgaataaaagcatctCCCTTAAagatatatgtaaataaacacGTTTTTAAGTATTCTTGATGTATAAACATTATGCACTGACTAGAAAAAGACAGCACCCCAGTTTATATTCAATATTCAATCTAATGTAACAAAAAGTGAGTGGGTGGTGGCATTTTTACTCAATAAAGTAGCAAGCCAAACTTGTAATATTTGAATAAAGTGTTTGaataaattttatttcattttcctgAGTATTTCTGTAGTGAGGCATGAAAAGTACAAAGAACGCACATTATTCTCAGATTAGGATTAATGAGTTTGACTACTTAATACGATGGCTGAGTATTTCAAGTGGACCCAAAAACGGAAAAACTCAAGTGACGAATGCCGCTGTGCTGTGAAGTGCTCAATGAAGTTGTAAGTGATCCTTGATAGGCGAgttcctgtttgtttattttaatatcccgaGAACCATGTCTTTTGTATTTATAAGCCTAAATAATCATTATCTGAATAGTCAGGTCTGTCACGATTTATGGTCTCCTTGaaacagtttatttgtttttagagtTATTCGAAAGTGTAATGCAGAAATGacatgtgctgtcaaacagatcttttctcaatttgctggcgttttttgtaattgcatatgctttcttaaattgcagcaggctaaagctctctcagccaccataaCTTATGTTGGTAAGGCAGATTTCAAATATAACAgattaaaagaaaatacaaactAACCGTCTGACAGACGAGAAGGAAGCAGCAGTCCTCTTCGGCCTAGCTCTGCAAGAGCCAGGCAGCCCCCATGCCAAGCATTATCTGTTTCCTGAAAACtgcacattataaaaaaaatatatagtgtaatataataaaattctgTATTTGAAAACACTTCAATCATATCATTACATCTCAGGTATGTAATTTCATACCTGAAACAATCTAAAACAGATTCAACCACGTCATCAGCAAGCTCTTTAGGCAGTCTACCAGTTACTCTACCAATCCTGCAGGCAGTTAAAAAAAGGAATGctggttaaaaaaataacaattatcaTTTGCTTTtgctatacatttttttcagagaGAAGCATGACACTATGATAGCCAGTTCAGTTAGGCCAAATAAAACAAAGTGTAATTTACGAACGTGACTATTCTCACCCTTTGGCAGAAGACCATCGGACTATAGTCTCTTTGTCTTTCAGTCCCAACAGCAGTTGTTCTACAACAGATTATGCAAATTAGCTTTACAAgagaatgtttgtttattttacaagagaatgttaagaaaataaaacaaatagatacTTACCAATGACATTCTCTACCTCCTGAGGTATGTCATAGTCTTCTTCCTGGCTAACAGACTCTAGATCAGGTTTTGTAGCCTCTACACTTTCAGTGACAGAAGACTGGGCCAGGTTCACAGCAAGTGACCGACTTCCTCTCTGGTACCTGGTCATGAAAAACACAATTGACACATTATTTTGGGTTGATTTCTTCATGCTGTAACAATAATTTACTCCTCAATTACCTCCATTTTGCCAAACGTGGTTTCAGAAAAGTTAAGCCAAGTCTCTGGACAACCTTTACTCCAAGTTTACGCAATGTGGCCTGGTTACTTTCGGCTATTTTCTTTTGGTTCAGGCACTCAAGAACTGTGGGGGCTGCGAATGTAAGGAGATTGgtaaacatttatctaaatacattttggtttgatagaaattaaaaaaaagatacacACCATACTGGAGAAAGTCATCCCGTTTCCCATGCTTGAAGAGCTGGGCCTGGTAAAAAATCATCACTTGATTAGAACTATGAAACTGTTTtcaaaattttttcttttttttttttttgtatagcaTGTGTTTAAGTTCGTCTATGCAAACT

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0008544 epidermis development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:1990841 promoter-specific chromatin binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-050417-313 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and promoter-specific chromatin binding activity. Predicted to be involved in epidermis development and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation. Predicted to be active in nucleus. Orthologous to human ZNF750 (zinc finger protein 750).

Ensembl:

ensembl_id ENSDART00000160717

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053105 lncRNA downstream 420088 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00052489 lncRNA downstream 1056242 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053104 lncRNA downstream 1122091 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052045 lncRNA downstream 1435346 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00052040 lncRNA downstream 1490496 46757611 ~ 46762706 (-) True XLOC_026727
TCONS_00053106 lncRNA upstream 64251 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053108 lncRNA upstream 202208 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00053107 lncRNA upstream 202208 48461497 ~ 48469102 (-) False XLOC_026739
TCONS_00053110 lncRNA upstream 202208 48461497 ~ 48469108 (-) False XLOC_026739
TCONS_00053109 lncRNA upstream 202208 48461497 ~ 48469108 (-) False XLOC_026739
TCONS_00052059 mRNA downstream 376775 47498433 ~ 47876427 (-) False XLOC_026735
TCONS_00052058 mRNA downstream 376775 47498433 ~ 47876427 (-) True XLOC_026735
TCONS_00052057 mRNA downstream 958837 47281236 ~ 47294365 (-) True XLOC_026734
TCONS_00052056 mRNA downstream 1017205 47222096 ~ 47235997 (-) True XLOC_026733
TCONS_00052054 mRNA downstream 1125106 47114328 ~ 47128096 (-) True XLOC_026730
TCONS_00052063 mRNA upstream 290005 48549294 ~ 48559906 (-) True XLOC_026740
TCONS_00052064 mRNA upstream 325395 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA upstream 327866 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052066 mRNA upstream 379305 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052067 mRNA upstream 706634 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052055 other downstream 1057968 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4158976 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 5387002 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 6941059 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 7723423 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 818473 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 1555908 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1844782 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 3288844 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 3648197 51907486 ~ 51907562 (-) True XLOC_026783

Expression Profile

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