RNA id: TU2088911



Basic Information


Item Value
RNA id TU2088911
length 403
RNA type TUCP
GC content 0.44
exon number 1
gene id G1824458
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 4926413 ~ 4926815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcagtgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2088908 lncRNA downstream 9917 4915964 ~ 4916496 (-) True G1824455
TU2088907 lncRNA downstream 10471 4915657 ~ 4915942 (-) True G1824454
TU2088906 lncRNA downstream 14520 4911643 ~ 4911893 (-) True G1824453
TU2088898 lncRNA downstream 53600 4872546 ~ 4872813 (-) True G1824445
TU2088896 lncRNA downstream 58942 4866890 ~ 4867471 (-) True G1824443
TU2088929 lncRNA upstream 24081 4950896 ~ 4951357 (-) True G1824471
TU2088934 lncRNA upstream 48357 4975172 ~ 4975495 (-) True G1824475
TU2088979 lncRNA upstream 101522 5028337 ~ 5034992 (-) True G1824493
TU2088983 lncRNA upstream 123911 5050726 ~ 5051361 (-) True G1824496
TU2088985 lncRNA upstream 126307 5053122 ~ 5053472 (-) True G1824498
XM_036960372.1 mRNA downstream 888138 4007081 ~ 4038275 (-) False LOC110531385
XM_036960373.1 mRNA downstream 888140 4007081 ~ 4038273 (-) False LOC110531385
XR_005039153.1 mRNA downstream 920091 4002702 ~ 4006322 (-) False LOC118943848
XR_005039154.1 mRNA downstream 924952 3999935 ~ 4001461 (-) True LOC118943849
XM_036960594.1 mRNA downstream 951605 3957781 ~ 3974808 (-) True LOC110510589
XM_036960780.1 mRNA upstream 224565 5151380 ~ 5153631 (-) False LOC118943901
XM_036960772.1 mRNA upstream 224565 5151380 ~ 5153632 (-) False LOC118943901
XM_036960773.1 mRNA upstream 224565 5151380 ~ 5153632 (-) False LOC118943901
XM_036960775.1 mRNA upstream 224565 5151380 ~ 5153632 (-) False LOC118943901
XM_036960776.1 mRNA upstream 224565 5151380 ~ 5153632 (-) False LOC118943901
TU2088833 other downstream 105965 4805464 ~ 4820448 (-) False G1824416
TU2088840 other downstream 105965 4805464 ~ 4820448 (-) False G1824416
TU2088845 other downstream 105965 4805464 ~ 4820448 (-) True G1824416
TU2088350 other downstream 264179 4661591 ~ 4662234 (-) True G1824125
TU2087847 other downstream 990370 3933893 ~ 3936043 (-) True G1823710
TU2089022 other upstream 192945 5119760 ~ 5120944 (-) True G1824524
TU2089053 other upstream 238993 5165808 ~ 5166374 (-) True G1824540
TU2089076 other upstream 309562 5236377 ~ 5236732 (-) True G1824561
TU2089080 other upstream 320193 5247008 ~ 5247957 (-) False G1824563
TU2089138 other upstream 411758 5338573 ~ 5339901 (-) True G1824605

Expression Profile