RNA id: TCONS_00053116


Basic Information

Item Value
RNA id TCONS_00053116
length 4113
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id XLOC_026739
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48461497 ~ 48473754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCATGAATAGGGTTAAGGATGTCCTGGAAGGAGACTAAGCTGTTTTAAGCTGTGGCTGAGCCATAGGTGGACGTTCATAGTGGCGTTGGTGCCACTTCTGCATTGTTTGGAATGACTGTCCTGTTGAAAATGCTCTGGACTGGGTTTTCATTATGATCTTCTACACCATGTAACCCTTCCCTTGATCAGTGTGAAGGATCTGAAGGCATATAAGGGATGTCCATGGAAAAAGAGGAGAATACGAAGGTTAGGACAACCATCCGAATTCAATGTTGGTGAGGAATGTGAGGATAAGGATTCATATTGGCCTCCGGACCCTatgtccattacaatggacatcacatgtcaGCCTTTTGTGGTTCCTGAGCATTTCATCAAATTTAAAACCTTTTTGTGAAAGTGGACGATTGTCATCCAATCAAATGGTGACACACTGCCGGCCTACCACTGCCTCTCAGGATCATCCCAAAACTTAAACCTGAACAATGTGCATGTCAGGACAGGCCAACCACAGCACAGAGACACCTGCAGATGGTTCCTCCTATTATTCCCTCTCTGTGTGGCGACAGATCTTCTATAACACGACGCATGTGTACAGTATGTAAACACTTCATTTATACAGTTCATCTTGGGCTTCATAATCCTCAGTGGAGCTCATGAAAAGCCACATTTCTGACTTCTGATTGCTAGAAATGATTGTGTTTAGCATTTGAGGAGCTCATTCTCTGTTTTGGCTGACTCTGCCTCTCTGTGTTTACTTAAAGGAAGAAAcgaaaatgaaaactctgtcactGTTTATTCACTCAAATGTCAATCTAGACTTAAATGCTCTTATTTTTCCATGGAAGACAGAAAAAGACATGGTTCTTCATGTTGCTATTGACTGCAGAGTTCCAGTTAAACGTTGTAAACTATCAGATACAAAGGAAGCTGTCAATGGGATGGCACCTTTTCAAAATGGTTTATTTTTGCATCCATCCATGGttgaaaataaatgttctgttttgaagtagaaattaaaaaaaatcattggatttacaatttattttaaaggtgAGTTGATGCAAACAGATTATATGGgatgaatttaagcaaacaaattacatttagttaTGTTTAACTTTGTTATAAGTTTagcctaaatataaaaaaaataataaaaataaacttagtaggtaatttatttacaaatagtCAATAATTATCATAAAatgatctttattttgtttaaaattaaaagtgtaaattactcaaacaaaaattgggaaaaatCGACAAGTTAATATGTTGAGAAAAGGGTGTCAAAATAAATTTCACTTTGTAAGAGAGACAGCaagtaatgtaaataatcacaAATAGATGGCAAGTAACTCATTGAGTTgaacataaaaactaaaataatatcaTCTTGTAAAATGTACTGGTGAACTGTAAAATatgctaggttccacacaatcgatttgtgtcgggacaacatgaaagaagtAAGTTAAATCAATCACTTTAACAAATTTAGGTGGCTTAAACAATtatcaattaagttgtccccataaaaactcaagaattttattgatttaactcattttaataaaatagtttgaacaaacaatgtttttttttctttttgagtgaATGATTTTTATATACAACTAAAAGATCTgtacaaaatacaacataaaatgtACAACTTAATGGAGCCTTATGTACCATTTTATTTTGAGCATTTTATTGTCTGTGTAGAAGCTGTTTGCTCATGAAAATCAACAGAGGCCAAAAGTTCAAAGTAAGTATAGAATGAAAATAGTCCTTGTGGCTTGACTGGTGTAATTAATCTTTTGGGTGTGATGCGTGATGACTTATTTAATGAACGGATTATGTTCTAAATGGATAGTTCGCCCAGAAATTAATAATTACCATGAAAGTACTCACTGACTCTCTCATGTAGGTTACTTTTATTTTTCTCTCCAGTAGAATAATAACCACTTAATATTCACTTTAGTTCACATTTCTCTCTGGAGTGttattctcacgtaaatccaccagaagctgctaCCAACTaactgataaccccacccaccTCTTCtcaaaacccaaccaattgtgttttcaaaagcacagattgaccagagCCCATCTACTTCCCTAagtccaaccgatagtgttttcaaaagcacagattgaccagagccattccacttccctaaacccaaacgatagtgttttcaaaagcactgattgaccagaaCCCATCTTactccctaaacccaaacgatagtgttttcaaaagcactgattgaccagagCCATTCCACTTCCCTAAGACCaaacgatagtgttttcaaaagcaccaattgaccagaaCCCAtctcattccctaaacccaaacgatagtgttttcaaaagcaccaattgaccagaacccatccacttccctaagtccaaccgatagtgtttttttttaaaagcaccaattcACCAGAGCCCATCTACTTACCAAACGATAGTATTTCAAAAGCAACGATTGACCAGAGCACATCTACTACCCTAAatccaactgatagtgttttcaaaagctaaGAGTGTGAGTTCAGTTGGTAAGCActaaaaggaatggcatcataccgacctgtagcatttgttttaaagatgaaatgcagccgtaAGTACTTCTGGCTAAAACATTTGCGATTTTGCAGAAATGAGTATActtgtacattttcagaatgagcctatgttgttagACAGAGTTCGCATTATACTGTATGATGGAGGTCCAGGATTTAACTGGTCATGGGTCATGATATATTAACAAGATATATGATAAGTCAACAAGAAGGTTATATCTTCTGACATATTGTGAACTCAAACCAAATTGACAATAGTTGATGTTTGTTTCATATTAAGTTTTCAGGCCTTATTTGACTGAGCACATTCTCTagtgtaaaaaattaaaacattagctATAAATGATGACACACTTTTTGGCTTTTTCAGGAGAACATTTTGAGGGGCCACGGTCTTAGCATGAAAAACACAACAACCAAAGATTCAAAAGACCTCAAATTTTGGGCAGCCTGTGTTTGGTTTCTGAGCTCTTGCCTAATTGCATGCAGGGATTGAGTCACTCTGGGCTGTTGCTCGGCCAGTCTCTGAGCTGTAAAACAAACCCAAAGTGGAGTTAACTGCGGTCAAggtgtgttattgtgtgtgtgtgtgctggaacAAGAGAACCAGATGATGAGGGAGAACTCTGCATCATCGCATGACATCATCACTCACTGATTCACTTCTCCAATTTACAGGaaacgttttatttttttctcacttCGTAAACTGAGAACCAAGCCCTCACGGAGATAAAAATACCAAAACAGTGATGCAGGAAACGACCCAACCAGCTGTTCTGCTCAAGAGCTCATATGGTATGTTTCACAACACCAGCAATCATAGCAAATGTCAACCTGACAAGTGCGCTTGATAAAAAACTGCCATGAGCACTGTGAGATGTGTACTTCAAGAACTTGGACTGGAGTAGTGCATGCTTGACATTTTTTCTGTCACCTGTACATTGTGTATAAACCAGATACCAGAGATTCTTCGGCATGtttcaaaaacaaatgtttatcTCTGTGAAAATGAAAGATAACATGTTTGATAGTCAATGGCTGAATGCAGTGTGAACTGATTGTAGTGCAACGCCGCAGCCAATTTTCAGCATTGCGTCTGCTGGAGTGTCAATCATCACGTTGGTGGTTATTGCTTCTGATAAAACTGCCATTTATTGAGAGTTGATTGgtgcttgtttgtttttgctgagCTTTGAAGAACAGTTCAAGAAatcaaatctgtcatcatttattagcACTGGTGTCATTCAAAATCTGCAGGATGTTCTGAATTTTATAAAGAGATTTTTTAAACATTGTACACTTCTTACGTTTGCTAATAGGCTGCATTTGAAGGTTGCTACATcattgctttaaaatattatcttttgCATTCTACAAtaacatcaagaacaccaaagTATTAATTGTAAAGTTATACTACACTTAATTTTCATTCAATTTCCTAGTTAAGTGTCCAGCACTTTCGATTTCACTCACACAAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053106 lncRNA downstream 133364 48323540 ~ 48328133 (-) True XLOC_026738
TCONS_00053105 lncRNA downstream 628383 47827202 ~ 47833114 (-) True XLOC_026736
TCONS_00052489 lncRNA downstream 1264537 47194738 ~ 47196960 (-) False XLOC_026732
TCONS_00053104 lncRNA downstream 1330386 47130032 ~ 47131111 (-) True XLOC_026731
TCONS_00052045 lncRNA downstream 1643641 46811351 ~ 46817856 (-) True XLOC_026728
TCONS_00052499 lncRNA upstream 530789 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA upstream 530789 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00053120 lncRNA upstream 554786 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00053121 lncRNA upstream 717284 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 717284 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00052060 mRNA downstream 202208 48253202 ~ 48259289 (-) True XLOC_026737
TCONS_00052059 mRNA downstream 585070 47498433 ~ 47876427 (-) False XLOC_026735
TCONS_00052058 mRNA downstream 585070 47498433 ~ 47876427 (-) True XLOC_026735
TCONS_00052057 mRNA downstream 1167132 47281236 ~ 47294365 (-) True XLOC_026734
TCONS_00052056 mRNA downstream 1225500 47222096 ~ 47235997 (-) True XLOC_026733
TCONS_00052063 mRNA upstream 80180 48549294 ~ 48559906 (-) True XLOC_026740
TCONS_00052064 mRNA upstream 115570 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA upstream 118041 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052066 mRNA upstream 169480 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052067 mRNA upstream 496809 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052055 other downstream 1266263 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4367271 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 5595297 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7149354 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 7931718 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 608648 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 1346083 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1634957 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 3079019 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 3438372 51907486 ~ 51907562 (-) True XLOC_026783

Expression Profile

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