RNA id: TU2089861


Basic Information

Item Value
RNA id TU2089861
length 1867
RNA type TUCP
GC content 0.51
exon number 4
gene id G1825145
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 6021536 ~ 6023962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtggttgttgtggctgtggctgtggttgttgtggatgttgttgttgttgtggatgttgttgttgttgtggatgttgttgttgttgtggatgtggttgttgtttttattgtggttgttgttgtggtaatTGCTGTTGTTATGgttgcagttgttgttgttgttgttgttgttgttgtggttgtggttgttgttggtgatgtggttgttgttgttgtggtggttgttgttgttgttgtggttgttgttgttgaaagccAACTTTGCCTTTCAGTGGTAACTTAAGCTTGCTGTTTGTACTGCTATCATATGACAGCCTCTCCCCTTGCTCAACAATGGCTGATTGGTTTCTCTTGTCTTACTAACTTGGGGCATTTCATGCGGCACAAtaactgtgtgtatctgtggctCTCTGTTTGTGTCAGTGGTTAGTACTTAAGGCTTCTGCTTCTTTGGCTGTCATATCACTGCCTCTCCCCATTCTTAACAACAGCCCCAGCAGCAACCAGAGCCAGCACACAGCAAGCAGAGCCAGCAGACAGCAACCAGAGCCAGCAGACAACAAGCAGAGCCAGCAGACAGCAAGCAGAGCCAGCAGACAGCAAGCAGAGCCAGCACACAGCAAGCAGAGCCAGCAGACAGCAAGCAGAGCCAGCACACAGCAACCAGAGCCAGCACACAGCAAGCAGAGCCAGCAGACAGAAAACAGAGCCAGCACAGAGCGAACAGAGCCAGCAGCAGGTAACCAGAGCCAACAGACACCAAGCAGAGCCAGCACACAGCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAGCAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAACAGACACCAAGCAGAGCCAGCACACAGCAAGCAGAGCAAGCAGCAGGCAACCAGAGCCAGCAGACAGCAAGCAGAGCCAGCACACAGCAAGCAGAGCCAACAGACACCAAGCAGAGCCAGCAGAGCTAAAAGCCTATCCCCCCCTTCGGATGTAACAATGAGCTCCTCGCTATCTTGAACACAACTGTTGAAGCCAAGGATCTTCAGAAACATATCCAGGCCTGAGCACTAAGAAAACAGTCCTGCGATCCAGACAGACAAGAGTCAGAGGGTGTTGGTCATGTGGTGTATTGAGGCCGTGCGATAGCATCCTGTCTATGATACCTCTTCAACAAGTACCTGTATTAATCCTACAGCACAGCCTTTGCACAAACTACAGCCtggggtggtctagtggttactGGCGCTGCCTTCAGAACAGATCACATGCCAGGTTTGAATCCCAACCCACACCCTTCTAATGCGTCCTCTCTACCTTCATTTCCCGTCTCTCTTCACTGCCTCTGGGCTGTTAGAACAGACATTGGACAATACATTATCcgttatatgtactgtatgtatccccTTAAAGACAAACATGATcagtcagttacctggtgttgAGTACTGGGGGAAGGGGcctggtcagttacctggtgttgAGTACCGAGAGAAGGAGCCTGGTGTTGAGTACAGGGAGAAGGGGcctggtcagttacctggtgttgAGTACCGAGAGAAGGAGCCTGGTGTTGAGTACCGGGAGAAGGAGCCTGGTGTTGAGTACTGGGAGAAGGAGcctggtcagttacctggtgttaAGTACCGAGAGAAGGAGCCTGGTGTTGAGTACCGGGAGAAGGAGCCTGGTGTTGAGTACTGGGAGAAGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2089852 lncRNA downstream 6217 6004534 ~ 6015319 (-) True G1825136
TU2089791 lncRNA downstream 20190 6001069 ~ 6001346 (-) True G1825085
TU2089786 lncRNA downstream 30322 5990847 ~ 5991214 (-) True G1825080
TU2089774 lncRNA downstream 52358 5967368 ~ 5969178 (-) True G1825070
TU2089739 lncRNA downstream 152419 5867589 ~ 5869117 (-) True G1825041
TU2089863 lncRNA upstream 500 6024462 ~ 6025554 (-) True G1825146
TU2089873 lncRNA upstream 9266 6033228 ~ 6034885 (-) True G1825148
TU2089876 lncRNA upstream 13823 6037785 ~ 6040242 (-) True G1825150
TU2089879 lncRNA upstream 19328 6043290 ~ 6058303 (-) True G1825152
TU2089889 lncRNA upstream 54785 6078747 ~ 6080273 (-) True G1825162
XM_036960806.1 mRNA downstream 22390 5460328 ~ 5999146 (-) False LOC110514830
XM_036960807.1 mRNA downstream 22390 5460328 ~ 5999146 (-) False LOC110514830
XM_036960808.1 mRNA downstream 22390 5460328 ~ 5999146 (-) False LOC110514830
XM_036960809.1 mRNA downstream 22390 5460328 ~ 5999146 (-) False LOC110514830
XM_036960810.1 mRNA downstream 22391 5460328 ~ 5999145 (-) False LOC110514830
XM_036959666.1 mRNA upstream 343059 6367021 ~ 6376535 (-) False LOC110515214
XM_036959668.1 mRNA upstream 343059 6367021 ~ 6376535 (-) True LOC110515214
XM_036960850.1 mRNA upstream 722411 6746373 ~ 6803906 (-) False LOC110510773
XM_036960849.1 mRNA upstream 722411 6746373 ~ 6804154 (-) False LOC110510773
XM_036960851.1 mRNA upstream 722411 6746373 ~ 6813723 (-) True LOC110510773
TU2089520 other downstream 22431 5945112 ~ 5999105 (-) True LOC110514830
TU2089138 other downstream 681635 5338573 ~ 5339901 (-) True G1824605
TU2089080 other downstream 773579 5247008 ~ 5247957 (-) False G1824563
TU2089076 other downstream 784804 5236377 ~ 5236732 (-) True G1824561
TU2089053 other downstream 855162 5165808 ~ 5166374 (-) True G1824540
TU2090407 other upstream 328126 6352088 ~ 6354021 (-) True G1825493
TU2090519 other upstream 634156 6658118 ~ 6659951 (-) True G1825582
TU2090621 other upstream 799206 6823168 ~ 6825818 (-) True G1825658
TU2090589 other upstream 902890 6926852 ~ 6927344 (-) False G1825645
TU2091165 other upstream 1560602 7584564 ~ 7584977 (-) True G1826079

Expression Profile