RNA id: TCONS_00052067


Basic Information

Item Value
RNA id TCONS_00052067
length 1620
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_026743
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48965923 ~ 48980319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAAACCAGATTTTCTCAGGATGAATTCTTGTGTCCAGTGTGTCTGGATCTCCTAAAGGATCTGGTGGCTATTCACTGTGGACACAGCTATTGTAAGAGCTGTATTACAGACTTCTGGAATATGGAAGATGAGAAGGGAATCTACAGCTGCCCTCAGTGCAGACAGACCTTTAGTCCAAGACCTGCTTTAGCTAAAAACACCATGCTAGCTGAAGTGGTCGACAAACTAAAGAAGACTACACCTCCTGCTGACTGTTATGCTGGAGCTGAAGATGTGCAGTGTGATGCCTGTACTGGAACAAAGTACAAAGCCATCAAGTCCTGTCTGCAGTGTCTGGAATCTTACTGTCAAACTCATTTTGAGCGTCATGAGGAGTTTCACTCTCGTAAACCACACAAAGTGATTGATGCAACTGGACGACTGCAGGACATGATCTGCCCAAAACATGAGAAAGAGCTAGAAGTCTATTGTATTACTGACCAACAGTGCATCTGTGAGCTGTGTAAGGAGTATGAACATAAAAACCACGCAACTGTATCAGCTGTAGCCCAGAGGACAGAGAAACAGAAAGAGCTGAAGGAGACACTGGTAAAGCTCCAGGAGAGACTCCAGCAGAGACAAAAAGATCTTCAGCAGCTGAGAGCGGCAGTGGAGTCTCATAAGCAATCTGCACAGACAGCAGTGGAGGACACTGAGAGGATCTTTACTGAGCTCATTTGCTCCATTGAGAAAAGACGCTCTGAGCTCACACAGATGATCAGAGATCAGGAAAAGACTATAAGGAGTCGAGCTGAAAGACACATGGAGCAATTGGAGCAGGAAATTGAAGATCTGAGAAGGAGAAACACTGAGCTGGAGCaactttcacacacacaacatcacatCCATTTCCTGCAGAGTTTCCAGTCTCTCTCAGCTCCTCCTGAATCTACAGATGTTTCATTCAGTTCTCTCTTGTGTTTTGATGGCCTGAGAGAATCTGTTTCTCAGCTGAAAGTCAAACTGGAGGATTTCTGCATAGAGGAGATTGAGAAATTCACAGAGAGAGtcaccaaaacggtTCCCAAGACCAGGAACGACTTCCTACAATATTCCCACAAGCTCACTCTGGATCTGAACACAGCACATAAACTCCTCCATCTGTCTGAGAGAAACAGAATGATTATTTGTACTGAGACAGagcagccgtatcctgatcatccagacagatttgacaGCTGGCGTCAGGTGTTGTGTAGAGAGAGTGTGCGTGGATGCTGTTACTGGGAAATCGAGTGGAGTGGAATTAAaggtgtgtgtatatcagtgtcttATAAGAGCATCAGTAGGAAGGGATTTggtaatgagtgtgtgtttggcgGTAATGATCAGTCCTGGGGGTTGTTCTGTTCTACATCCAGATACTCATTATGGCACAATAAAAAAAGGTCTGATCTCCCTCTAAAGCCCATTAGCCGTAGGATAGGAGTCTATGTGGATGTAGGTGCAGGAACTCTGTCCTTCTACAGCATCTttgacacaatgagcctcatccacactgtccagaccacattcactcaGCCGCTCTATCCTGGTTTTACTGTTGATCCTCGATCATCTGTAAAACTGtgttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165319

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053119 lncRNA downstream 492169 48461497 ~ 48473754 (-) False XLOC_026739
TCONS_00052494 lncRNA downstream 496798 48461497 ~ 48469125 (-) False XLOC_026739
TCONS_00053118 lncRNA downstream 496802 48461497 ~ 48469121 (-) False XLOC_026739
TCONS_00053117 lncRNA downstream 496808 48461497 ~ 48469115 (-) False XLOC_026739
TCONS_00052493 lncRNA downstream 496809 48461497 ~ 48469114 (-) False XLOC_026739
TCONS_00052499 lncRNA upstream 19584 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA upstream 19584 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00053120 lncRNA upstream 43581 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00053121 lncRNA upstream 206079 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 206079 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00052066 mRNA downstream 249501 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052064 mRNA downstream 353845 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA downstream 362452 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052063 mRNA downstream 406017 48549294 ~ 48559906 (-) True XLOC_026740
TCONS_00052060 mRNA downstream 706634 48253202 ~ 48259289 (-) True XLOC_026737
TCONS_00052068 mRNA upstream 6352 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052069 mRNA upstream 30668 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052071 mRNA upstream 122891 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052072 mRNA upstream 145784 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052073 mRNA upstream 170503 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052055 other downstream 1770689 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4871697 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6099723 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7653780 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 8436144 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 97443 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 834878 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1123752 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2567814 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2927167 51907486 ~ 51907562 (-) True XLOC_026783