RNA id: TCONS_00052499


Basic Information

Item Value
RNA id TCONS_00052499
length 1298
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_026745
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48999903 ~ 49001293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatttaatgtgattttcaaCAAAGGTCAACAAAAAAATCCATTTATAGTCCCACCAAGTTTCCACTTTTGAGCCCCATGGATAGGAAGCAAGACACGTCGATCAAATTGTGTCCTTAATACagagtttaaaaaaatttgtCCGCCAAAACCGGCTGAGGTCTCTGAGATAACAGTGACAGAAGATCGCCTCAGAGAGGAACTGTACAGGCAAAAGGTATGTATTAGATTTTCTCTTTTTAGGAGtcattattttaatcaaatacatGCCTCCtcatatatgtaatttgttttactttatacTGTAGATTCATGTGGTTAGGAAATTATGTAAGGAGTGTGGGTTAGATTCGTCAGGATCATGAGCTGACCTCCTTCTGAGGTTGTCCTGTGAAATGAAGTCAAGGCAGACATACGACAAGATTTTTCAAAAGATCTGGGTGGCTTCAGGTAGGGTAATTTGCTTTATGTGTGTGTTACTTTGTGAAAGTTTTGCCACGTGGGTCGAAAAGCTTCCACAGCTGgtagtttttaattgtttgaacttattttttttttaatagttttgtttaatATACCTTTGTGAGGATAAACATTGGTTAACTTTTTCCCCTCTCAGGTGGTTGGGCTGTGATTTTGTGCCTGTGCGGCAATGTGTACAGCATCAAATGTAACATTCGTGCAGAAAGCCCACATGACTTTGCAGACATGTTGCTTTCCTAGAAACACATGCCAAATGTCGTCATACATGACTTTGCACATGGGTTAGCAACCCACATGAACCTTAGAGAACCAGAAAGTTTGCCTTTCAAGCCATTTGAAGGACGGTTAAGAGCACCAACTCCAGACAACATAGCCAAAGCCAAAGATGGGAAACTGAAGGTCTCATTGCCTTggctaaattgtaaaaaaaacatcccagACACTGAAGGTCATCCAATAACCGGTTCAGCAGAACATTATGCTCTGTATGACCGGTTCCATGAGGACAATACAAAAGATCCTTGTGATGTCCTGCGGAAACTTGACCTGGTCCCACAACTCGCGGGACAAGTGAACAGTCAAGTTGCAGAACAGCTATTTTCCAGAATGAAGAAAAACAATTACTTTTTAAACATGACATTACCATCGACTCATCTGTTTCTTATGAGAAATATCATACATCATCATAACATGCACAGAAATGAACAACGACTAGGCAACATAAAAAGGGCTTTTGAAAATGATGTCACAATGAACAGGCACAGCCAGGCAGTGTTggCAAATCCACTGTCATCTGAGAGAGTATCCACTGTTCCA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0001757 somite specification biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0006396 RNA processing biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053119 lncRNA downstream 526149 48461497 ~ 48473754 (-) False XLOC_026739
TCONS_00052494 lncRNA downstream 530778 48461497 ~ 48469125 (-) False XLOC_026739
TCONS_00053118 lncRNA downstream 530782 48461497 ~ 48469121 (-) False XLOC_026739
TCONS_00053117 lncRNA downstream 530788 48461497 ~ 48469115 (-) False XLOC_026739
TCONS_00053115 lncRNA downstream 530789 48461497 ~ 48469114 (-) False XLOC_026739
TCONS_00053120 lncRNA upstream 22607 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00053121 lncRNA upstream 185105 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 185105 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA upstream 204843 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053124 lncRNA upstream 404865 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052068 mRNA downstream 6323 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052067 mRNA downstream 19584 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052066 mRNA downstream 283481 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052064 mRNA downstream 387825 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA downstream 396432 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052069 mRNA upstream 9694 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052071 mRNA upstream 101917 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052072 mRNA upstream 124810 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052073 mRNA upstream 149529 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052074 mRNA upstream 378481 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052055 other downstream 1804669 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4905677 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6133703 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7687760 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 8470124 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 76469 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 813904 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1102778 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2546840 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2906193 51907486 ~ 51907562 (-) True XLOC_026783