RNA id: TCONS_00053120


Basic Information

Item Value
RNA id TCONS_00053120
length 870
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_026747
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49023900 ~ 49036782 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAATGTCGTTCGAAGAGTCTCCTCTCTCCTGGCTTTTGTTGATTGTTTTGTGGAGTAGaaactgtgttgttttttttactcggCTAAATTGTTAAAAGTGATTGCTGAGCGTTGACTTTGAGATACTGTATACAGAGATACATGTGCTGAGGAgggtgcctttttgttttattactttttccTCATGTTTTGTGGTTAGTAGAGAGGTCACAGTTGCTCCAGTGTAGTCCAGAAATCCACCATGCTGCTTCTCAGTAAGACCACCGATGACTTTCAGCATCCCCTCCACACTTTCATTTGGTTCAAGTGTCGCctgatgaaaataaaaacaagtcaTCTTAAATGCAATTAACCCAAACAGTGTTAATGCCAAGGAATACTCAAGGAATCAACACTCACATCTTGTCCACCCAGATCAGTCTTCACCCATCCTGGATGAAGCGCCATGCAGAGGATCTCATCTGTCTTTACCTCCTCAGCAGCCAAAACAGTCAGCATGTTAAATCCTGCCTGAAAGATAAACACAGCATTTCAATTATACACATCAgctcaagctatcaaatctccaGGCGCCATCTAGTGCCAAAGCAGGACTTCAGTGTACCTTAGACACAGCATATGGCAAGGTTTGGAAGTGGCTGTATATGGGAGGCATTCTGGTCATGGAAGCCGCCACGGTGGAGATATTGATGATCGCTGCTTTTTTACTGGACATGCCTGGTGTCCCACTGGCTTTGGCTGCTATTTGTAGATATGGTCTGTACTCCtgaataaaagcatgaacaaataaatgacataTACTGGACGAGGATAGTATTACAAATTACAGAAATCGTTTACCCAAAAGATAAAATTCTTTTATTAATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052499 lncRNA downstream 22607 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA downstream 22607 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00053119 lncRNA downstream 550146 48461497 ~ 48473754 (-) False XLOC_026739
TCONS_00052494 lncRNA downstream 554775 48461497 ~ 48469125 (-) False XLOC_026739
TCONS_00053118 lncRNA downstream 554779 48461497 ~ 48469121 (-) False XLOC_026739
TCONS_00053121 lncRNA upstream 149616 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 149616 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA upstream 169354 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053124 lncRNA upstream 369376 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052500 lncRNA upstream 730184 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00052069 mRNA downstream 8697 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052068 mRNA downstream 30320 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052067 mRNA downstream 43581 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052066 mRNA downstream 307478 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052064 mRNA downstream 411822 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052071 mRNA upstream 66428 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052072 mRNA upstream 89321 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052073 mRNA upstream 114040 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052074 mRNA upstream 342992 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052075 mRNA upstream 389011 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052055 other downstream 1828666 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4929674 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6157700 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7711757 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 8494121 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 40980 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 778415 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1067289 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2511351 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2870704 51907486 ~ 51907562 (-) True XLOC_026783

Expression Profile

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