RNA id: TCONS_00053121


Basic Information

Item Value
RNA id TCONS_00053121
length 1378
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_026752
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49186398 ~ 49372676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTACCATCGCTCTACCAATGTTTTACTATGGCTTTActatcgttttaccattgttttaccatcgtttaACCATCGTCTTACCATTGTTTTACTATTGTTTTAGCATCATTTTATCATCGTTTTAGTATTgtttttaccattgttttactatTGTTTTACCATCCCAGATAGCAAGCCCACATTGAATCAATGTTGGTTATTGGTTATAATAATCAGTATCAGACGTCGATCAAATTTCGACATTGAATCAATGTTCTTTATTTCGTCGGTATGTCGGAAGGTTAATACATCGAGAATATAACACTGATTTAATGTCGAAATGAAGTTGACTCTTCAACATTTAGGCCACCCGCCGTATTTGGTCGAAATCATAACATTGGTTCGATGCTAAAACTTGATTGGAGGACACTGAGTCGGTTCTTCTGCGCGAGTCAGCGTGGTGCATGCGTGCGCGTGCTCATCATTTGAATCAAGTAACGAACATAAGACAACGGACGGAATGCTTATCTGAAGGTTAGTACTTTATATTCAACGgtttacatgttttatttgttgtttttccaAGAGTTAATGTTAAATTGTAACTTTAGATGTGTAAATTAACACTTTACCTCTTCCTATACATTTTTTATGAGCCTGCAGGTCGCCCTGTACGTGCTCAGGCCATTGGCAGCAGCTAATCTATGAAGGGATGAACTCCTCGCCAGAGACGCTCCATAGCATTGAATGGGAAAAGCTTTGCCATTTCttTCTCTGGAATCTCCAGTTGAAGACATCAAAATCTTTAacctgtgtcagcctggacagacGTCTATTCCAGTTCTTCCTACACCACACTAATCTCTCTGCCTATGTATGGATTCGTGACTATTATGTTCTCTAAAGatattactggagcaaaacaacagcaccctTGACTGAAGTTTCTTTTAGTGGCCAGTATAATTAAAGTCTTagaaagttttattattattatttatttttttggagctgcaaataattttttccctctctcacacaaacacactaaacgACTGCTTGTGCTTATAGTACAGTGACAATATTGACAATATTTTAGccgtttttataattatattacataaatttttaTTGTTACAAAAATCTTAAGTAGTTGTCACAACCCGATGCACACTTGAGTTTAAATGAGAATGAGAATTTCTCAACAGGGgacaacactaaggattttttctaaggATTTTTTATTGGCCTGGTGTGGAATATAAAATTGAAATTAAGATGGAGAGCAGGAAGtagaaaaaaactgaatgggagacataAAGGAAAGTCCATATTTTTTAAATCCATACCATATTACAAAAGAGAAAAAGATAGAAATATAATGAGGAcagttttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053120 lncRNA downstream 149616 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052499 lncRNA downstream 185105 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA downstream 185105 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00052495 lncRNA downstream 717297 48464830 ~ 48469101 (-) False XLOC_026739
TCONS_00053123 lncRNA upstream 17570 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053124 lncRNA upstream 217592 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052500 lncRNA upstream 578400 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053125 lncRNA upstream 732632 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 746070 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052073 mRNA downstream 22715 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052072 mRNA downstream 48394 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052071 mRNA downstream 75688 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052069 mRNA downstream 171195 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052068 mRNA downstream 192818 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052074 mRNA upstream 191208 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052075 mRNA upstream 237227 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052076 mRNA upstream 271262 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052077 mRNA upstream 316353 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052078 mRNA upstream 363014 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052070 other downstream 108519 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 1991164 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5092172 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6320198 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7874255 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 626631 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 915505 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2359567 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2718920 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4500744 53689310 ~ 53689428 (-) True XLOC_026804

Expression Profile

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