RNA id: TCONS_00053122


Basic Information

Item Value
RNA id TCONS_00053122
length 1354
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_026752
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49186398 ~ 49372676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCATTCTCGTTAATGatacaacatatataaataaataaaataacaaaaatgaacaaaaagtgtgtgtgtttctttctctCTCGTCTGTTCTCGTCCCATCTCCATGTCGCCCCGCCCTAATTGGACGTGCTGCGTGCGTGCGCTGTGGTTGGTGCTTGGAGACCGCATCTTTTGAAAAGACGTTTCTGACTCCAAGTCCAAAATGATGTCATTCACATTAAAGGTCCTGAGGTTTGGTATCTTTGGGTAAAGCCAGTCATAAACATCTGACCATAATGCATCCACAAACATACAGGGATGGTGGGTTATtttgccgtgtgtgtgtgtgtgtgtgtgtttctctcgtCCTGTTCTCGTCCCGATTCCAGGTCGCCCCGCCCTAATTGGTCGtgctgcgtgcgtgcgtgcgctgtGATTGGTGCTTGGAGatgcattttttgaaaagtcGTTTCTGACTCCTTTAACTGTTCCGCATTCCGGGTTTCTAGACCTCTCCGCCATTAGTTCGTCACTTTCAACGATCGCTGCTGATGCTTTCGAAGGAAAGATTCACTTCTGCTGGATGTAAAGATGCAAACCAACAGCGTTGTCAAGCGAAGTTCAGAGAACGGAAGATCACATTTCACTCATTTTTGGAAAGTGGATGCAAACCAACAACATTGTCAGAGTTTCGAGATCAGTGCAGAAAATGGAAGACTACATTTCACTCATTTTTGGAAAGTAttTCTCTGGAATCTCCAGTTGAAGACATCAAAATCTTTAacctgtgtcagcctggacagacGTCTATTCCAGTTCTTCCTACACCACACTAATCTCTCTGCCTATGTATGGATTCGTGACTATTATGTTCTCTAAAGatattactggagcaaaacaacagcaccctTGACTGAAGTTTCTTTTAGTGGCCAGTATAATTAAAGTCTTagaaagttttattattattatttatttttttggagctgcaaataattttttccctctctcacacaaacacactaaacgACTGCTTGTGCTTATAGTACAGTGACAATATTGACAATATTTTAGccgtttttataattatattacataaatttttaTTGTTACAAAAATCTTAAGTAGTTGTCACAACCCGATGCACACTTGAGTTTAAATGAGAATGAGAATTTCTCAACAGGGgacaacactaaggattttttctaaggATTTTTTATTGGCCTGGTGTGGAATATAAAATTGAAATTAAGATGGAGAGCAGGAAGtagaaaaaaactgaatgggagacataAAGGAAAGTCCATATTTTTTAAATCCATACCATATTACAAAAGAGAAAAAGATAGAAATATAATGAGGAcagttttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053120 lncRNA downstream 149616 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052499 lncRNA downstream 185105 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA downstream 185105 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00052496 lncRNA downstream 717317 48464836 ~ 48469081 (-) False XLOC_026739
TCONS_00053124 lncRNA upstream 33482 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052500 lncRNA upstream 394290 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053125 lncRNA upstream 548522 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 561960 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052091 lncRNA upstream 755590 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052073 mRNA downstream 22715 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052072 mRNA downstream 48394 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052071 mRNA downstream 75688 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052069 mRNA downstream 171195 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052068 mRNA downstream 192818 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052074 mRNA upstream 7098 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052075 mRNA upstream 53117 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052076 mRNA upstream 87152 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052077 mRNA upstream 132243 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052078 mRNA upstream 178904 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052070 other downstream 108519 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 1991164 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5092172 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6320198 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7874255 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 442521 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 731395 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2175457 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2534810 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4316634 53689310 ~ 53689428 (-) True XLOC_026804

Expression Profile

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