RNA id: TCONS_00052076


Basic Information

Item Value
RNA id TCONS_00052076
length 2199
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_026756
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49459828 ~ 49504023 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGTGGAGAGAGGATTAATGGAGGGGGTCTGACTGTCGAATTATGCGAACTACATAGTGCACAAGACCGAATTGCTTTAACAACGTAAACAAGCAAACGATCACGCTACCGAAAAGGTACGGCGAAGACGGCGTGCAGCGATAGAAATCGCGCACGGACGGTGAAAACGAGGGCTTGTGTCGCTCAAGAGGAAAGTCGAGGGCCTCGCTCAGGGTTAGCAGAGCGAGGAAGAGGAGCGAGAGAAGGAGAAGAAGACGGGCTCTTCGTCTTATTTTAGCGGACTGGACCCGACCCAGGAGCACTGAAGGACATTACCGAACCCCAAGCGCTGCAATCAGACAGCTACTGTTAGCTAGCTAGCGCTGGCTAGCTAGCTAACCAACTAACCAGCTACTATCATCAAGCTTCAGACTTTATGTGATCTGACAGCATACTGTGATCCAGCGAGTTATGATCAGACACAGCTAGTGCGACGCCCGCAGAAATCGTATGATCAGCAAGGGGACGGAGTCTTAAGACAGTTGGCGTAAAGAAAAGTCGATTTAGATCTGCTATACCTGGCCTGCAATCATGGGCAACGCGCCCACCGCCAAGAACAAGGGCAATGAGATGGAGAGCGTTAAGGAGTTTCTCGCTAAAGCCAAAGAAGATTTCCTAAAGAAATGGGAGAACCCAGCACAGAACACTGCGTCTCTGGACCATTTTGAGCGGTTGAAGACGCTGGGCACCGGCTCCTTTGGACGAGTCATGCTAGTCAAGCACAAAGAATCAGGCCAGCATTTTGCCATGAAGATCCTCGACAAACAGAAGGTGGTGAAGCTGAAACAGATAGAACACACACTGAATGAGAAACGCATCCTGCAGGCTGTCAGCTTCCCCTTTCTTGTGCGATTGGAGCATTCTTTCAAGGATAATACTAACCTGTATATGGTAATGGAGTATGTTCCTGGAGGAGAGATGTTTTCTCACTTACGTAGAATCGGAAGATTTagTGAGCCTCATGCCCGATTTTACGCCGCCCAAATAGTTCTGACCTTTGAATACCTTCACTCACTCGATCTCATCTACCGAGATCTGAAGCCTGAAAACCTGCTCATAGACCAGCAGGGCTACATACAGGTAACAGATTTTGGATTTGCTAAACGTGTAAAGGGCAGGACCTGGACACTGTGTGGCACACCTGAGTACCTGGCACCAGAAATCATCCTCAGTAAAGGCTATAATAAAGCTGTGGACTGGTGGGCTCTGGGAGTGCTGATCTACGAGATGGCTGCTGGTTACCCGCCATTCTTTGCTGACCAGCCTATCCAGATCTACGAGAAAATTGTCTCCGGGAAGGTCCGCTTTCCTTCACATTTTAGCTCTGACCTGAAGGATCTGCTGAGAAACCTGCTGCAGGTCGATCTGACGAAACGCTTCGGGAACCTGAAGAACGGCGTCAACGACATCAAGGGCCACAAATGGTTTGCAACCACCGACTGGATTGCAATCTACCAGAAGAAGGTGGAAGCCCCGTTCATCCCTAAGTGCAAAGGCCCCGGGGACACCAGCAACTTCGACGACTACGACGAGGAAGAAATCCGGGTCTCTATCACGGAGAAATGTGGAAAGGAGTTTGCTGAATTctagaagcagcagcagcagcggtgGAGGAGAGGCATGGAGAGAGATTAGACGTGGGGCAACAGAGAGAAGAAGAAGACAAGGATGAGGTTTTCCAGGTTGGGATGATGGACTGGACTGAGCCTGTATTCGGTAACAACAACGCAAAGCCCTCACACACAGACGGAGGGAGAATAGGAGTCCtgagagataaagagagagagagagacgccaGCGGTGTTGCCTTTTCAGATCCTTCGTCACTTGTTACTTGTCCATTTTCATGTTTTCCCTCTTGTTTGGTAGCCAGGGTCCATTGGGCAGAGATTCAGTCACCTCTCTGGGACTGGCTGGCATGGGGATATTTGtgactacttttttttttgtttgtttgtttttttctccagAGATATAGAGGTTACTTTCTGGTACTGAATTTTGGCTTCTCCAGAGAAAATTACCCCATAttacttcaatttttttttaattagcaaagGTGTCCTTGCTCTGTAGTTATCCACTCTTTCACATAttcttttcattattttaatttccaaTGCACATATTGGCACTCAATACCAAATCAAACCAACTG

Function

GO:

id name namespace
GO:0071333 cellular response to glucose stimulus biological_process
GO:0010737 protein kinase A signaling biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0034237 protein kinase A regulatory subunit binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004691 cAMP-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050114-6 Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be involved in protein kinase A signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in fin bud; hatching gland; nervous system; otic vesicle; and presumptive neural retina. Human ortholog(s) of this gene implicated in adrenal cortical adenoma; congestive heart failure; and primary pigmented nodular adrenocortical disease. Orthologous to human PRKACA (protein kinase cAMP-activated catalytic subunit alpha).

Ensembl:

ensembl_id ENSDART00000168108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053124 lncRNA downstream 41483 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 87152 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA downstream 87643 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053121 lncRNA downstream 271262 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053120 lncRNA downstream 423046 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052500 lncRNA upstream 262943 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053125 lncRNA upstream 417175 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 430613 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052091 lncRNA upstream 624243 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 769133 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00052075 mRNA downstream 11879 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052074 mRNA downstream 76932 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052073 mRNA downstream 296145 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052072 mRNA downstream 321824 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052071 mRNA downstream 349118 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052077 mRNA upstream 896 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052078 mRNA upstream 47557 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052079 mRNA upstream 55238 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052080 mRNA upstream 253555 49757578 ~ 49815223 (-) False XLOC_026760
TCONS_00052081 mRNA upstream 253555 49757578 ~ 49925313 (-) False XLOC_026760
TCONS_00052070 other downstream 381949 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2264594 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5365602 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6593628 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 8147685 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 311174 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 600048 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2044110 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2403463 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4185287 53689310 ~ 53689428 (-) True XLOC_026804

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000033_01312689_01320687.mRNA True 1073 mRNA 0.49 9 CI01000033 1312626 ~ 1320687 (-)