RNA id: TCONS_00052077


Basic Information

Item Value
RNA id TCONS_00052077
length 1356
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_026757
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49504919 ~ 49514874 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTTACTCTAGATAATTTTTgctttatattttcttttaatttgggAGGAGAGACAACCTAAATCGTTTCGTTCTACCGCTTTAACTAACGTTATATTGGACTTGCAAAACACAATAGCTTGCAAGCTAAACAAGTGAAGCAAAGTCATCGAGAAATTTACTTTACAAATTTCTGTcgagttttcagttttttttcggTTTTGCTTTTTTGAAGGTGTGAACACCCCTTTTCTTGCTAATATAACTTTAGTAGAGTTATGGCAAAAGTACAAGTACTAAATGTGGCAGTCCTGGACAACCCGAGTCCGTTTGGAAACCCCTTTCAGTTCGAGATAACGTTTGAGTGCATGGAGGATCTTCCTGAGGATCTGGAGTGGAAGATTATTTACGTGGGCTCGGCAGAAAGTGAGGAGTACGATCAGACTCTTGACTCTGTCCTGGTTGGTCCAGTTCCTGCAGGCCGACACATGTTTGTGTTTCAGGCGGATGCTCCAAACTGTTCCCTAATACCAGAGACTGATGCTGTGGGTGTCACTGTCGTTCTGATCACGTGCACATACAGAGGACAGGAGTTCATACGCATCGGCTATTACGTTAACAATGAGTATACGGACACTGAGCTTCGTGAGAACCCACCACTTAAACCTAACTATGGACAGCTCCAGAGGAACATTCTGGCTTCAAACCCACGTGTAACCAGGTTTCACATCAACTGGGAGGGATGTGCTGAGAAAATGGAGGATTCTGAGAACGTGGACCCTGCACCAAACGCCATGCTGCCCCCATCCTGCACCCCAGGAAAAGCACCTCTGCTCGGCCTGGTGCCAGACAACTCCATGGACTGTTTGTAGTGACGCAGACTCCTGTGAATAATCCTCACATCTCAAGGCTCATCCATGAGCTCAGGTCAATCTGGACACTGTGGAGGAGAGGCGGGATTATTCAAACGTATCACAAATAAAAGCTTTATCTAATTGTGTTTCAGTCAGCACGCCTTATTGGTTCCAAATGAGTGCTGTGCAGAATTCTTTAGATGCTTTCAGCATGCAATAAAGATGTTTGCTTTTCAGTTTGAAACATGAGTGAGTCATGAATCTAAGACCCAATTCAGGAATTAGGATGTGCTGAATCTAATGATCCAAAACCAATCCATTCATCTAAACCGAAAGGGGGTGGGAGATCAGCGCACTAGATAAGATGTCAGATGCGCAACTAATTTAACAGACGCAAACAGCAGTACTTTTGTAAaggacatttatttttgtattatattgtgtgtgtgtgtgtgtgtctgtatatatacTTGTCTGTGTCTTTTTGTATCCGGTTCTCATTGAAATAAATGATTTGTAACGTG

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0006336 DNA replication-independent nucleosome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-197 Predicted to enable histone binding activity. Predicted to be involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Predicted to act upstream of or within chromatin assembly or disassembly. Predicted to be located in nucleus. Is expressed in proliferative region. Orthologous to several human genes including ASF1B (anti-silencing function 1B histone chaperone).

Ensembl:

ensembl_id ENSDART00000167179

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053124 lncRNA downstream 86574 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 132243 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA downstream 132734 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053121 lncRNA downstream 316353 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053120 lncRNA downstream 468137 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052500 lncRNA upstream 252092 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053125 lncRNA upstream 406324 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 419762 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052091 lncRNA upstream 613392 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 758282 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00052076 mRNA downstream 896 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052075 mRNA downstream 56970 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052074 mRNA downstream 122023 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052073 mRNA downstream 341236 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052072 mRNA downstream 366915 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052078 mRNA upstream 36706 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052079 mRNA upstream 44387 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052080 mRNA upstream 242704 49757578 ~ 49815223 (-) False XLOC_026760
TCONS_00052081 mRNA upstream 242704 49757578 ~ 49925313 (-) False XLOC_026760
TCONS_00052083 mRNA upstream 517520 50032394 ~ 50046004 (-) True XLOC_026762
TCONS_00052070 other downstream 427040 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2309685 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5410693 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6638719 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 8192776 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 300323 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 589197 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2033259 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2392612 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4174436 53689310 ~ 53689428 (-) True XLOC_026804

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000033_01336781_01348511.mRNA True 1705 mRNA 0.36 4 CI01000033 1336564 ~ 1349405 (-)
bowfin (Amia calva) AMCG00008632 True 594 mRNA 0.52 4 CM030126.1 6908774 ~ 6915444 (-)