RNA id: TCONS_00052078


Basic Information

Item Value
RNA id TCONS_00052078
length 1572
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_026758
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49551580 ~ 49554912 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTGTCAAAGCACAATATCGAAACCAGAAGAAGTTCATAAAAATCCCAGAGGcttgctttgatttatttttagcaGAGGTGAAAGAGAAGTTTTCATTACCACAGGATCTTGTAATTACAGTTACAGATGAAACTGGTACAGAGGTGGACGAAGATGTGTTTCCTGATCTAATGAGCACCAGTGGACTGCTTCTTGTTataaatgctttaaatgacaGTGGACCCTCCACACCTCAATCTTCAGCCAGCTTTGATACAGATACACTCTCTTTAACTTCAAAAAGCAGTGAGGACAGTGACTGGTTTAGTCCAAAACGCTTTAGAAAGGATGAGGATGAGGCTTCACAAAACTCACAGGCCAGAGATTTGATCAAACAAATTCTAGAGACAAGACCAGGTGGAGCAAATGTGCTGAGGGAGTATGAAGATACGGGGACAATTAATGATGAGACAAGAAAAGTTATGGTGAACATTCTAGTAGCCCACATGATGGAGACAGAAGgGAGAGTTCCACACCGCCTTACCAAACAGAAGTATGGTTTGGGAATTATCACCTTGTTTCCCTCACTCAGAGATCCCCAAGGGAGGACTGGATATGAACATTTTTATGATGGCCAGAAAAACTCTGGATTCTTGTCGTGGCGACTCAAAACCGTACAAAGGGGGACAAAACCTTCTGGAAATAAAGATGATCCTAAAACAGAGGAAAAGGGGGGTCCTTTGCTTGACCGACAGCTGTGTCACCCTGAAGATCAGCTGGACAGTGATCAAAGTCTAGAGGCCATCTCTCTGATGAATCATACAAGCGACCGTGAGGTCATCATGCAGAAGATGAGGGcaacatttaaatacagacaACGTCTTGTGCGTGATCCAGAGAAATCCACCACTATTCTCTCTGTTTTTCCTCGATTTCTGGATACGAAAGGATTGATTCTCCAGGACTTTACACTCCTGTTCGGGTCAGAAACGGCTTCCAGACTCTTGGAAAGGTGGCCAACAGTTTTCAAGTCAAAGATTATCAAGCTAGCAGAAACCTTGACATCCACTCCACTGCTGAAAAGATTGCTGTCATCTGCCAAACAGAACAAAGAAAGCAGCGAGGCAGAGGATTTCCCAGAGTGGGACAGTGACATATCATCCTTTCTTCTACTTCTGCATTTTTTGTCGCCCCAAGTTTCTGGAAGAAAGAAAATCCAGAAGATGAGCATCTCACAGGCAATTGACCATCTGGTGGTTTTTCAAAAGGCATGCCGGAGTATTCAGGAACACCTCGAGACAGAAGACAATCGTCAACCTTACATTCTTGCCATAGGAAGCAGCAAGGAAGCCATCAGTCAGTTCTTCATTGTGCTTGACAAAAAGCTCATCCCATGTCAAGAATCCTCTTCACTAGCGGCAATCGATGAACTGTTCAAGGTCCATTTTGTGTTCAGTATCAGTTATGATCCTCCACTTAAAGGTTTGTTCACATTTCTCCAGACCACAGTGTACAGAATTGATGTTGGCAGCACAAGTGAAACCCCAAGGGTGAAGGAGCTCAGAGCTAAATTACTGAATGATGTTTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159392

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053124 lncRNA downstream 133235 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 178904 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA downstream 179395 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053121 lncRNA downstream 363014 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053120 lncRNA downstream 514798 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052500 lncRNA upstream 212054 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053125 lncRNA upstream 366286 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 379724 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052091 lncRNA upstream 573354 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 718244 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00052077 mRNA downstream 36706 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052076 mRNA downstream 47557 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052075 mRNA downstream 103631 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052074 mRNA downstream 168684 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052073 mRNA downstream 387897 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052079 mRNA upstream 4349 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052080 mRNA upstream 202666 49757578 ~ 49815223 (-) False XLOC_026760
TCONS_00052081 mRNA upstream 202666 49757578 ~ 49925313 (-) False XLOC_026760
TCONS_00052083 mRNA upstream 477482 50032394 ~ 50046004 (-) True XLOC_026762
TCONS_00052084 mRNA upstream 499275 50054187 ~ 50066528 (-) False XLOC_026763
TCONS_00052070 other downstream 473701 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2356346 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5457354 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6685380 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 8239437 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 260285 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 549159 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 1993221 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2352574 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4134398 53689310 ~ 53689428 (-) True XLOC_026804