RNA id: TCONS_00052080



Basic Information


Item Value
RNA id TCONS_00052080
length 4468
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_026760
representative False

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49757578 ~ 49925313 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAAACGTTTCAGATTTCGTTCTGTTCTCCAACTACGGGGATGAAATATGGATCAATAATCAGgttgtgtggAGTCAGCTGAAGTCATCCTATGAGGTGCGCATATCCCATTGGTCGTCGGCTCCCGTCAGTGCCATCAGCAGCAGGACTAAGGGATGTCACAAGTAGTTCTCCTTCTGACTCTACTCAGTTTCAACTCCTGCATCCAGGTGTCTTCTGCTGTATCCCTCAAAACtatgatggaaagatggatgatGTACCGAGATGAATGTTTTCGAAATATGAGCAGAGAAGCACCGATGACAGGTGTGGTGTGCAACAGGACGTTTGACCGGTATGCCTGCTGGCCTGATGCCCTGCCCAACACTACAGTGAGTGTGGCCTGTCCATGGTATCTGCCCTGGCACAAGGAGGTCCGGCATGGGCTTGTGCATGTGGAGTGTGATGCAGACGGACAGTACAGCAAGCAGAAGGATGCCAGTGAATGTCTGTCACGTGACAACATAcaacACTATGGCCGGATCCTCCGTCAGTTTCGCACCATGTACACAGTTGGATATTCTCTATCTCTCGGAGCGCTGGTGCTGGCGCTAAGCATCCTGGTGGCCTTCAGAAAGCTGCACTGCATGAGAAACAACATCCACATGAACCTGTTTGCCTCCTTCATCCTGCGCGCCTCTTCTATTCTCATCAAAGACGCCTTGTCGGAAAGACCTGATACCTTCCCTGTTGGCCAGGACATCACCACTGAACTGGAGGTGGAGTGGCTGGTTAAAAACGAGACAGCGGTGGGCTGCAGAGTTGCGGTAGTGATGATGCAGTACAGCATATTGGCGAACAGCTACTGGCTGCTGGTGGAGGGCATTTACCTGCACAGCCTTCTGGTTGTCACTGTCCTGACCGAGAGAAACTACCTGAGCATCTACCTGAGCATCGGCTGGGGTGCCCCTCTGATATTTGTCTTGCCCTGGGTGATCGTGAAGTACTTGTACGAGAATGAAGAATGCTGGGAGCAGAATAATCACATGGAGTACTGGTGGATCATCCGCTCTCCCATTCTGCTAGCTGTGTTGATTAACTTCTTCATCTTCATACACATCATCAAGATCCTCGTGTCCAAACTGAGGGCGCATCAGATGAGATATTCTGACTACAAGTTCCGGCTTGCAAAGTCCACGCTCACCCTGATTCCGTTACTGGGGATCCATTCGGTCCTGTTTTCATTTGTTACTGACGAGTCTACCTCACACGGTGCTCTGCCCCTACGCCTCACAAAACTCTTCATAGACCTCTTCTTCAACTCCTTCCAGGGGCTGCTGGTTGCCATCTTATACTGCTTCGTCAACAAGGAAGTTCAGTCTGAGATTCTGAAGAAATGGAGACGTTGGAAGCTTGGGAGGGACATTGAGGAGGAGTATCGTCACACCTACAGCCAGAGCCTTCAGATTCAGAAGAGTGGGAGCATCATGGTCCATCCCACCAACCTCCCACGGCTACCTGACATTGCTACCACTACCTCCCGGCTCGGCAGTCCAGAAGAAAAGCAGATGTTGGTTTCTAGCAGCCAAAATGGCATGGGTATTGGGCAGGGATGTCTGCAGTTCACTTCCACACAACAAGATGGCTCCACCTGCAGTTCTATAACAGAGGACATGGTGGTGGTGGACAGGGAAAGGTATTGTAGGGTTGCACAGGGCAATGCCGAGAGCAACTTGTGAGCTAAAGGAGACTCCATACGTCTCACCCGAAGACCAGATCACTCTCGCTTCCTCTGGCTGAGGGCTCTAGACCCTAGGCCCTAGCTTGAGCgagaggtgtgtgtatgtgtatgtgtccTTGGCACTTGTGCGAGTTTCCTCAACAGGCAACTCACAATGGACACCAGTCCTTCACATTGCAGGGTGCTCAGCTGACACTGTCCCAGGATTAATGGTGAGCAAAAGGTGGACATGTTAACAAAGATTTGCACAAATGTACATGCTAACAAACTGAATGATAGAGTCTTACCTCTAGTCTTATTTAACTGTGATTTAGTAGTGAAAACCCATCTGGATTGCAGGGTCCAAGTGAAATCAGCCAAGCAAACTGTTGACCAACCTTTCTGGAGGAACTGAAGAGATACACCGAACTGAACTTTCCAAAAGATAACATAAACAGCGAGTTTGTGTAGAACTCTGCAAATACTTCCATCCAGAAATGACCAACTTAGACAAGAATTTCCATGACAATTTATGCTAATTTGGTGCCAGAACACTAACAAAGCTTTGTGTTTTTGGGTTAAGCTGATTTTGCTGGTTAAGATAATGAAGAAACTTTGTGCACCCACAGTTTGGTTTGCATATATTTTTGAATTAATTGACGCTTATGGGTACATGTAAAGAGTAAGTGcttgtgtttaattaaaaacgTCCTTCACTTTAATGGCCATGGTCAAGGTGTAGATTTAGACTGATCAATTTTGCTTGTGTGCCTTTTATTATAGGTCTTAGACCCcagtattaaaacaaaaacacaaagattGACCATAAAAGTGAAGTACAAATCTATCAGTTAAACTCACAGAGGTGAAAGTTGCTTAAAGCAAACTCTAGTGTGTAGTGAAGAAAACATCCAGCACACATTAGAAGCATTTGCCTACTATTAATCATAGTGAAGTTCTCCCTTCAAGAAAACAAGCATAGTATGTTTAAGCATGCAAAACACAGCCATATGTGAAAGGCTTCAAAGGAACTAGGTCACTGCCTTAATGGCGTAGTATGCCAGATTTGATTCCCCTATGTCAGAGGAGACGACTGTTCACCAGACCTGTATGTTCAAGAGTCAGTATTAGTTAGTAACTGCTTCTTCTCTCGATTGCCTCTCATCTCCTAAATGGCATTGGAATCCTTTGCCACAAGTCTTTGAAAGATTTTCAGGATGTGTAGGAGGAACTCTGAGAGCCAGAGAAGATTTCGAACAAATTACAACCAAGAACATAGATCAAAATCTTTCTTCACTCAGAGGACGTCTTCATGCTAGATTTACAATACAATATTTCATAGAAATACAGTCGTAAGACACTCAAAGGAGATTCCGAAAAAGGATGCACTTGAGGCGTGTCATTTCTGTAGCATCATCGCCACTAAAGTGACCACCCAAGTGACCCATCTGTGCCATTACAACATCGATTCTACCAACGGCTTGAGTTTTTTTGCTGGGACTATCTGTATGAGGGGGTAGTGTATTGTGGGTTTTAATCAACAATGAGTCCCTGCTGGTAGATGCTGCATTTACACTTAAGGGTACCATAAATGGCAGAATAACTCCAAGAGCCCTGAATAGAAAAAGAGATGAAGCTTCTACCAAGGAGGATGCAATTGAAGTCAATGTTCTGTGGGGCCACAGAAATCATCACCATGGAGGCAAAAAGCTTCATTTTAGGCCATTCAAAAGTAGCTATGTATTCTGgcaaagtaaacattttaattgCAAAAATTTTGTTGTATCATATTAGATGTCAATTGAGTGCATTTAAGTTGAATGAGAAAGCTTACAGATGTTGAATTGTCCTTGGTCCGATTAAATGGTGTGTTAAGGAGAATTCGaaatttgtaatctctgtttagTGCCACTAATGGTGTTAAAATGGCATACTTCACCTTAAATGACAATGAGCAGCTGATGCCCCATATTGTGGCATAATGatgcagatttttattttctttaggtCATCAAATGCTTGATGATCATGACGATGATTATCGCAGATAACTATGTGGGTCAATTTGcacaaatttaatttataattgttaGATATGTAGATATCGCCTGTTGAGATTTGTAATGACTTTGTTTTGTGGTGTATGTTATTTGTGCACATgatgtgtattttgtgttttggCTAGTGGACAGTGATTGAAACGTTGCTTTAGTGTTCAGTCAATGATAAAGAGGCATTTTCTGCAACACTCAAGACCAGTTTTGCCTTTTGAGTgacacaatttattcatttattgatagTAATGCATTGGTGGTAAATTTGTATTGACTGCAGGTACATAAAGtgcaaaatgttacaaaattcagttgtttttttttctttaaagtggAAATACCGCCACAAGAGATCAAAGACCATGAACTTATTTGTCTGAGGTTGTCTGCCAAAGCAAAACAATCATGTTGAATATTTCAAACAGATTTTTTCAAAATTGGCGTCATTTACTGTTATCCAAGCATGAAAGTAATCGTGGAAGTTGATAAATCATGCATACATGGGTCTGCCTTCTTTTTCAATGTGAGCGTAAGTCCTCTATTTCTTGCAGCCAAGCTGAAGTGATGCCAGATGCCTTGCAGAAGCAAAGCGTCTGTTATGCTCATCTTTCTGCCTTCAGAACCTCTTGGAATATCTTGGAATCAACTTGCCAAGTGTTTCTCTGGAGAACCAGAACCATTCTCTGAAAGCAGGAGATATGGAAAGCTGAAactgt

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0010906 regulation of glucose metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017046 peptide hormone binding molecular_function
GO:0016519 gastric inhibitory peptide receptor activity molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004967 glucagon receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050516-1 Enables glucagon receptor activity and peptide hormone binding activity. Acts upstream of or within regulation of glucose metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; male organism; and muscle. Human ortholog(s) of this gene implicated in Mahvash Disease and type 2 diabetes mellitus. Orthologous to human GCGR (glucagon receptor).

Ensembl:

ensembl_id ENSDART00000181208

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00053124 lncRNA downstream 339233 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 384902 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA downstream 385393 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053121 lncRNA downstream 569012 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053120 lncRNA downstream 720796 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00053125 lncRNA upstream 105975 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00053126 lncRNA upstream 119413 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00052091 lncRNA upstream 313043 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 457933 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 523557 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00052079 mRNA downstream 191214 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052078 mRNA downstream 202666 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052077 mRNA downstream 242704 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052076 mRNA downstream 253555 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052075 mRNA downstream 309629 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052083 mRNA upstream 217171 50032394 ~ 50046004 (-) True XLOC_026762
TCONS_00052084 mRNA upstream 238964 50054187 ~ 50066528 (-) False XLOC_026763
TCONS_00052085 mRNA upstream 239150 50054373 ~ 50066499 (-) True XLOC_026763
TCONS_00052086 mRNA upstream 261570 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052088 mRNA upstream 308284 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052070 other downstream 679699 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2562344 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5663352 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6891378 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 8445435 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052087 other upstream 288848 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 1732910 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2092263 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3874087 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 5248044 55063267 ~ 55079244 (-) True XLOC_026816

Expression Profile


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