RNA id: TU2091526


Basic Information

Item Value
RNA id TU2091526
length 986
RNA type TUCP
GC content 0.54
exon number 1
gene id G1826369
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 7959839 ~ 7960824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actaaataacttttttgcccgctttgaggacaatacagtgccactgacacggcctgcaacgaaaacatgcggactctccttcactgcagccgaggtgagtaagacatttaaacgtgttaaccctcgcaaggctgcaggcccagacggcatccccagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgcttcaagagggccaccattgttcctgttcccaagaaagctaaggtaactgagttaaacgactaccgccccgtagcactcacttccgtcatcatgaagtgctttgagagactagtcaaggaccatatcacctccaccctacccgacaccctagacccactccaatttgtttaccgcccaaataggtccacagacgatgcaatctcaaccacactgcacactgccctaacccatctggacaagaggaatacctatgtgagaatgctgttcatcgactacagctcggcattcaacaccatagtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctgacgggccacccccaggtggtgagggtaggcaacaacatctccaccccgctgatcctcaacactggggccccacaagggtgtgttctgagccctctcctgtactccctgttcacccacgactgcgtggccatgcacgcctccaactcaatcatcaagtttgcggatgacacaacagtggtaggcttgattaccaacaacgacgagacggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaactaaggagatgattgtggacttcaggaaacagcagagggaacaccccccaatccacatcgatggaacagtagtggagagggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2091516 lncRNA downstream 11677 7947875 ~ 7948162 (-) True G1826360
TU2091495 lncRNA downstream 45435 7914027 ~ 7914404 (-) True G1826340
TU2091466 lncRNA downstream 90278 7868468 ~ 7869561 (-) True G1826319
TU2091459 lncRNA downstream 102677 7853947 ~ 7857162 (-) True G1826313
TU2091458 lncRNA downstream 102725 7853947 ~ 7857114 (-) False G1826313
TU2091529 lncRNA upstream 2540 7963364 ~ 7963603 (-) True G1826372
TU2091531 lncRNA upstream 3806 7964630 ~ 7964858 (-) True G1826374
TU2091532 lncRNA upstream 4101 7964925 ~ 7965125 (-) True G1826375
TU2091536 lncRNA upstream 12555 7973379 ~ 7973679 (-) True G1826379
TU2091546 lncRNA upstream 21130 7981954 ~ 7982362 (-) True G1826385
XM_036960439.1 mRNA downstream 550478 7397159 ~ 7409361 (-) True LOC118943880
XM_036960326.1 mRNA downstream 1058650 6885354 ~ 6901189 (-) False LOC110518105
XM_036960327.1 mRNA downstream 1058650 6885354 ~ 6901189 (-) True LOC110518105
XM_036960851.1 mRNA downstream 1146116 6746373 ~ 6813723 (-) True LOC110510773
XM_036960849.1 mRNA downstream 1155685 6746373 ~ 6804154 (-) False LOC110510773
XM_036960135.1 mRNA upstream 14095 7974919 ~ 7979808 (-) False LOC110531557
XM_036960136.1 mRNA upstream 15851 7976675 ~ 7979808 (-) True LOC110531557
XM_036960185.1 mRNA upstream 120930 8081754 ~ 8083928 (-) False LOC110531799
XM_021615231.2 mRNA upstream 120930 8081754 ~ 8083943 (-) False LOC110531799
XM_036960186.1 mRNA upstream 120930 8081754 ~ 8089912 (-) True LOC110531799
TU2091165 other downstream 374862 7584564 ~ 7584977 (-) True G1826079
TU2090589 other downstream 1032495 6926852 ~ 6927344 (-) False G1825645
TU2090621 other downstream 1134021 6823168 ~ 6825818 (-) True G1825658
TU2090519 other downstream 1299888 6658118 ~ 6659951 (-) True G1825582
TU2090407 other downstream 1605818 6352088 ~ 6354021 (-) True G1825493
TU2091855 other upstream 182359 8143183 ~ 8147004 (-) True G1826594
TU2092808 other upstream 881778 8842602 ~ 8947132 (-) False G1827228
TU2092809 other upstream 881778 8842602 ~ 8947132 (-) False G1827228
TU2092801 other upstream 882791 8843615 ~ 8948639 (-) False G1827228
TU2092803 other upstream 882791 8843615 ~ 8947132 (-) False G1827228

Expression Profile