RNA id: TCONS_00053126


Basic Information

Item Value
RNA id TCONS_00053126
length 773
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_026761
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49934636 ~ 49937735 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGATGACTCCCACACAGCCACAATTACTGCGGTGCCACTGTAAGCGGAGGATCCCGATGCTGCACtcTTCTTCTGTGTCCTGAGTTCCCTGGCCTGTCAGTCTGGAGTGGATTGCTGCCAATATCTATGGTTTTGACCACTGTTGCTTCCATTCTTGGTTGGCTGTTGATTCTGGAGCATCTTGTCCCTACCACTGGCTTTCCTGTGTCATTGCCTGCATTGCTTGGACCTTATCATCACCTTGTCTGTCTAATTAATTTGGTCAAAcacctttttgttttgttcattggtCAACTGGGTCTGCTTTCTTGCAACCAGCTATGAAAAAGTGAGTTTTGTATCTCCTTCTAGGGAAATCTGCATAAATCAGGCAATTAGTGTAAATTCTTTCTGTGATGGAAACAGGATTTTTACAGAACAGAATTACCTTATAAGTCAAAAACCATTATTATCATGaccactctaaaaaaaaaaaatctgtccttGAACAAGCAAAAAGCACTGCCTTATGCagttaaacaattataataataaaaagctagCAATAATTGTTAGTAAATACTGAAGTATAAAACCTATAAGTgctaaaataatgaaatgcaaTCAGGAAGAAACAGAAGCTAAGGTATGAGCAAATTTATCAACAAAGAGACTGACTTGACATCTCATGCAAATGGTAATAGGGAATTAAACCTAAAACAGAACCTAAATGTGACAGTAGAAGCCAATTACTTTAGTTTTTGTACTGTGATTTCCAAGACAATAAAATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053125 lncRNA downstream 9359 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 144606 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053124 lncRNA downstream 516291 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 561960 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA downstream 562451 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00052091 lncRNA upstream 190531 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 335421 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 401045 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00053128 lncRNA upstream 495816 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 496058 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052081 mRNA downstream 9323 49757578 ~ 49925313 (-) False XLOC_026760
TCONS_00052080 mRNA downstream 119413 49757578 ~ 49815223 (-) False XLOC_026760
TCONS_00052079 mRNA downstream 368272 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052078 mRNA downstream 379724 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052077 mRNA downstream 419762 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052083 mRNA upstream 94659 50032394 ~ 50046004 (-) True XLOC_026762
TCONS_00052084 mRNA upstream 116452 50054187 ~ 50066528 (-) False XLOC_026763
TCONS_00052085 mRNA upstream 116638 50054373 ~ 50066499 (-) True XLOC_026763
TCONS_00052086 mRNA upstream 139058 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052088 mRNA upstream 185772 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052082 other downstream 119349 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 856757 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2739402 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5840410 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 7068436 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052087 other upstream 166336 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 1610398 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1969751 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3751575 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 5125532 55063267 ~ 55079244 (-) True XLOC_026816

Expression Profile

//