RNA id: TCONS_00052084


Basic Information

Item Value
RNA id TCONS_00052084
length 1287
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_026763
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50054187 ~ 50066528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACCATCGCAGTGCATTGTGGGTAGGTCAGGAAGCGCCAGGAGTGGAGGACGCCATGTGCTTTTGCTAAAGCCGGACTGTCAGTCACTTGCTCACCGAGAGAGTGAGTCGTTTCTCGGTCACTGTCCGCCCGTCCAGTCGCCTTTTTTGACCGCTGAGTTCCGGTTCATGATGTACTGCAGCAGACACTGCGTCCGGCTTGCGCTGCGGGCCGCTGTCAACACTCACCGACACAGTGTACAGAGGACAGCACTGTATGCCCAGCGAACACTCAAGACCAGCTCTGTCAGTGCGGTCGATGCCATCGCAACACCTCATCTAGATGGGACGCCCAAAGAATACTCGCCCAAAATCCAGCAGCTCGTCAATGACATCGCCAGCCTCACGCTCATAGAAGTGTCCGATCTCAACGAATTACTTAAGAAAACTCTGAACATTCAGGATGTTGGAATGATGTCTATGGGCTCAATGGCAGCAGTGCCAGTGGCACCTCCTGCTGAGCTCACAGAAGGACTGGCAGAGGAGGAGGTGGCACCTGCAAAGAAAGAGAAAACCCATTTTACAATAAAACTGACAGAATTCAAGGCGGCTGATAAAGTGAAGTTGATTAAAGAAGTGAAGAACTGCATGGAAGGCATAAATCTTGTACAGGCCAAGAAGCTTGTGGAATCTCTACCTCAGGAGATCCGGACAAATATTTCTAAAGACGAGGCGGAAAAACTGAAATCAGCACTTGAAGCAGCAGGAGGCACTGTGGTGCTGGAGTGAATATCTGCGTTACTACACGTGTTACCTGTCAGTCAtcgttttgttgtttttttacaaaaataattaaaagaattcTAAGATAACAATTAACGCCTTTAAAATGACCACTTGGTCAATAAGAGATTGTGTGGATGGTGAAGTCAGAATGAACTGTCAAGCTCTGATCTTGCAAACAGCTGCCATCGATGACTTTTGTCCTTTAGCTACACATGTGTTATGGGCTAAATAGACGGTGATGGTCTGTGTCTCTGAAGCTTGGTCTTTATGAAATCCACCCTGAAAATAGGATGTGTTGCTTACTGCTGGTGGTTAAATAAACTTGTTATactgtaatgtgtattttaatgAATCATCATTACTTACAGAgcaataatcaaaacaaaaacaacagtttttttgttttgtttgttttaccaaGACGTTTTGATCAAGGCGAGATCACTGGATGCTGACTGAAAATCtcaatcttcaaaaaaaaaaatgttttctatgTGAATATATGATAGATGTTGACCACCA

Function

GO:

id name namespace
GO:0006390 mitochondrial transcription biological_process
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050417-187 Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and pectoral fin. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 45. Orthologous to human MRPL12 (mitochondrial ribosomal protein L12).

Ensembl:

ensembl_id ENSDART00000154561

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053126 lncRNA downstream 116452 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 128910 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 264157 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053124 lncRNA downstream 635842 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053123 lncRNA downstream 682002 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00052091 lncRNA upstream 61738 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00052098 lncRNA upstream 206628 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 272252 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00053128 lncRNA upstream 367023 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 367265 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052083 mRNA downstream 8183 50032394 ~ 50046004 (-) True XLOC_026762
TCONS_00052081 mRNA downstream 128874 49757578 ~ 49925313 (-) False XLOC_026760
TCONS_00052080 mRNA downstream 238964 49757578 ~ 49815223 (-) False XLOC_026760
TCONS_00052079 mRNA downstream 487823 49559261 ~ 49566364 (-) True XLOC_026759
TCONS_00052078 mRNA downstream 499275 49551580 ~ 49554912 (-) True XLOC_026758
TCONS_00052086 mRNA upstream 10265 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052088 mRNA upstream 56979 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052089 mRNA upstream 57204 50123732 ~ 50124413 (-) True XLOC_026765
TCONS_00052090 mRNA upstream 61198 50127726 ~ 50136424 (-) False XLOC_026766
TCONS_00052092 mRNA upstream 61953 50128481 ~ 50139860 (-) False XLOC_026766
TCONS_00052082 other downstream 238900 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 976308 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2858953 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5959961 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 7187987 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052087 other upstream 37543 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 1481605 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1840958 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3622782 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4996739 55063267 ~ 55079244 (-) True XLOC_026816

Expression Profile

//