RNA id: TCONS_00052091


Basic Information

Item Value
RNA id TCONS_00052091
length 2041
lncRNA type retained_intron
GC content 0.40
exon number 6
gene id XLOC_026766
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50127726 ~ 50147160 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTATGAAACTCACCATACTGAAAGAGACAAGAGCGACTCACTACAAACACTAAAGGCACTACAGGGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGGTCACTGAcaacatcagttttttttttttttttatctgtaattGTTACCATAGAAAACATTTATTGGAATAAATTGATATATTTGACTTGACCATTATAGGTTATCATTTTTGCCTTACTATATGCATAATATTTGAATACATTCAGTAATTGAGAAATAGTTTTCTCATCCTAATGCTGTTCAAAACCTCTACACTctgataattttaataaaatattatgaaaacctgaaaaaaatgtatgcagCTGTATTCACAGTCAATATTTTACGTCTcttctaaaaaaatattaaagaatttGAGTATTACTTAAGTAGGATTAAGTAAAAATAATTGTTGTCCTTAAtctgcagagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGAACAATCTGCTGCCACTACAGCTTTCACTTTCTCTCCCACTACCATTGCAACATATAGTTGTCTGTTATTATTAAActtatatcttttatttattattgttattactttttaattactatttacATGAAGCATACCTCAAACTGTGATCTTTTTTTAGCACATATCAGCTTTTTTTAATGATAAGGATCATTTTCATGGCAACCCCTTTTAGCAAAAAGTtaatttattatatgaatataaCCATCATAACttctaaaaatgttttgtaatattgacaaaataaaatTTTGACTTCTAAGTAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-228 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39) and TRIM48 (tripartite motif containing 48).

Ensembl:

ensembl_id ENSDART00000138503

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053126 lncRNA downstream 190531 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 202989 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 338236 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053124 lncRNA downstream 709921 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053122 lncRNA downstream 755590 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00052098 lncRNA upstream 133310 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 198934 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00053128 lncRNA upstream 293705 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 293947 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052100 lncRNA upstream 302306 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00052088 mRNA downstream 598 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052089 mRNA downstream 3853 50123732 ~ 50124413 (-) True XLOC_026765
TCONS_00052086 mRNA downstream 10126 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052084 mRNA downstream 61738 50054187 ~ 50066528 (-) False XLOC_026763
TCONS_00052085 mRNA downstream 61767 50054373 ~ 50066499 (-) True XLOC_026763
TCONS_00052094 mRNA upstream 1845 50141691 ~ 50146854 (-) True XLOC_026766
TCONS_00052095 mRNA upstream 35320 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052096 mRNA upstream 132116 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA upstream 132726 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052099 mRNA upstream 301598 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052087 other downstream 10304 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 312979 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1050387 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2933032 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6034040 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 1408287 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1767640 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3549464 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4923421 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 5316507 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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