RNA id: TCONS_00052093


Basic Information

Item Value
RNA id TCONS_00052093
length 1845
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_026766
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50127726 ~ 50147160 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAAAGACACAATTTTGCATTGTACAGTTTAttataatatactttttttaactgtatttttattcCAATTTATTCTGTTCTAATGAATTGTACATgtattcaaaattattttatttggtaTTCTTCAATGGTCGAGCAACACCTGCATATTATGTATGAAATATCcagtacatttttaataaaattttaatcgTATTGACAgataattctctctctctctctctctctctctctctctctctctctctctaataaaaaaattaagtataaacattaaaaatgtttacataagCTATTCGCTTTAAGGCCTATCTATTAAGGAGAGTTTACTGATCATATACATTATTTTACTTGGCTTTATCCCGATTCTTCAACATGTTGATGCAAAATCGGTTTTGTATACACCATTGAGGGTTAACTAATAAAAGTTGCGAAATACAGGAAGCCTCACGCGCACTGTCTTTTTTCCCAGTCAATTTCTGTCGCATTTTATCAACTCGTTTgaggaaaaagaaaagagaatGGGGATGGAGTCCACCCTCAGTCAACTGTCGGAGAAGCACTTCTTGTGCTCTCTGTGTGAGGAGATCTTCAGTAACCCTGTGACGACTCCGTGTGGACACAGTTTCTGTAAAGCGTGTCTGCGTGTTTACTGGAGCCGTAGCGGTTCAGACGAGTGTCCGCTCTGCCGGAAGGCCTTCGGCTCCAGACCGCGCCTCAGCGTCAACCGCATACTGGCTGACGTCACTGAGAACTACAGAAAAACACGCCTGGCTGCCAAATCCAAGTTCTTCAGTATGGATGAACTTCAAGATGAGCCCAAGAATGAGGGAGAGGTGGAGCAAATGATCCAGGAAAGAGTTCAGAAGATTGAGAAACTTCAGAATTCACTAAAGCTAGTGAAGAGCACATGTCTCCGTGAAGTTCAGGAGAGTCAGAGGGTGTTTTCCAATTTGCTTAGTACATTAGAGAAGAGCCATAAACTGGTCGTGACTGCAGTTGAACAGAAACAAAGAGAAGCAGAGAAAAGAGTCGAAAGACTTGTAAAAAGCCTGGAAAAAGAAATCCTTGAGCTGGAAAATGGACAATCCAATCTAGAGCACCTGAATGACATGGAGCGTCTTAAAAAGagcttcagtcacatACCTCGGCCAATGAGAGACTGGTCTAAAGTCATTCTGGAGACTGACCCTTGTGTTGGCTTCACCCGACAGACTGTGACTGACTTCATGGATACAGTGACGATGGAAGCTAAAAGACTTTCAAAAACTGAACTCAAGAGGTTGCAGAAATATTCAGTTGATGTGAATCTGAATCCTCGGACAGCTCATGCTTACCTCTACATCTCTGAGGATCGGAAGGAGGTCAGGCATGCAAATAAGCAACAAGAAGTTCCAGAAAACCCCAAGAGGTTTGACCGGGTGATCAATGTCATGTCCAAGGAAGCTTTTCGCTATGGCAGACACCTTTGGGAAGTGGATGTTGGAGATAAGACTGACTGGGATTTGGGGGTAGCCAAACAATCTGTCAACAGGAAAGGAAAATTCACAATATGTCCATCCAATGGTTTCTGGACGCTCAGTTTAAAGAATGGCTCTCAGTATGTCGCAAACACATACCCTCCGACTTCCTTCAACCTCAGTCACAAGCCTAAAAGGGTGTCCATTTACCTGGACTATGATGAGGGACGCGTATCTTTCTATTGTTCGGATACTGGGACTCATATCTACTCTTTCAGAGACAGTTTCACAGATAAGCTCCACCCTATCCTCAGCCCAGGACGACCCCATGGAGAGAAGAACACTGCTCCCCTTATCATCAGCAGCAGCTGCTGCAGCATCTGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-228 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39) and TRIM48 (tripartite motif containing 48).

Ensembl:

ensembl_id ENSDART00000191341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053126 lncRNA downstream 190834 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 203292 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 338539 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053124 lncRNA downstream 710224 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00053123 lncRNA downstream 756384 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00052098 lncRNA upstream 125996 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 191620 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00053128 lncRNA upstream 286391 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 286633 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052100 lncRNA upstream 294992 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00052088 mRNA downstream 901 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052089 mRNA downstream 4156 50123732 ~ 50124413 (-) True XLOC_026765
TCONS_00052086 mRNA downstream 10429 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052084 mRNA downstream 62041 50054187 ~ 50066528 (-) False XLOC_026763
TCONS_00052085 mRNA downstream 62070 50054373 ~ 50066499 (-) True XLOC_026763
TCONS_00052095 mRNA upstream 28006 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052096 mRNA upstream 124802 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA upstream 125412 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052099 mRNA upstream 294284 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052102 mRNA upstream 714016 50861176 ~ 50863370 (-) False XLOC_026774
TCONS_00052087 other downstream 10607 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 313282 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1050690 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2933335 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6034343 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 1400973 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1760326 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3542150 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4916107 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 5309193 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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