RNA id: TCONS_00052094


Basic Information

Item Value
RNA id TCONS_00052094
length 2415
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_026766
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50127726 ~ 50147160 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCTATCTATTAAGGAGAGTTTACTGATCATATACATTATTTTACTTGGCTTTATCCCGATTCTTCAACATGTTGATGCAAAATCGGTTTTGTATACACCATTGAGGGTTAACTAATAAAAGTTGCGAAATACAGGAAGCCTCACGCGCACTGTCTTTTTTCCCAGTCAATTTCTGTCGCATTTTATCAACTCGTTTgaggaaaaagaaaagagaatGGTAGGATGCTGCATGCCGCTGATTGGATGGAGGGTGGATGTGCCAATAGTATCTGAATGCAACcttgatgcaagctgagactgcatatctcgaTGCCTAATGCGCATGACCTTCAAAAATTTCTGATAGCATATCTCCAATTCTTCATCTCCTGTCAGCACTACTCTTAGTATGGCGACAGTCAAAGAGAAAACACGGAGAAGAGATAGCTTAGACAGCCCTCCTAACATGAGCAGTGAAACACCACTAAGGATGCTGATCTTCGGCAGCTCTAGTGATGTTCAGATCTCAACTTCCCAGTCTATATTGGGGCAAGACGTCTTTTCCAGATTTGAAGTCAACATTTTAGCAACCAAGAAAAGCTCAGGGGTCGTTCAGGAAAGAAAAACAACTCTGATCAATACCCCAAATCTTCAGGATAACAGAGGCTTACCGGATCGTATCGTCCAGAGGGAACTGAGGAAGGCTGTTTGTTGCTCTTGTCCTGGTCCTCATGCTGTGCTGCTCATTCTAGATGCGCTTCATTTGACCGCAGACACTACAGACATACTTAAGCCTGTGGTGCACTACTTTGGTGAACAAGTTTTGAAGCACATACTGATTGTTTTATACCAAAAGAAAAATCGGAGAGCTCTGTCCATAGAGGATGAGGTGAAGAGGAATAAGAGCTTTAGGGAGATTGCAGAGAAATGTGGCCACAATTACCTGTTCTTCAATGAAGAAATGAACCAGACTCATGAGGGAAGCCAGACACAAGCTCTGTTCACCAAGATTGATGAGATGGTCTCGGAGCATGGAGTTTACTCAAACATGGAGTTCAAGGATGCTGATAAAAGAATTCAGATCGAGGAGCGCTTCATCAGAAAATCCATGGAGAAGCAGATCAGGCAGACAATGGAAATGCTGGAGAAGAAGCATTCAGGAGAAGCTCTGGTCAGAGAGATGAAGAACTATGAAGATAAGATACAGATAGAGTGCAGAGAAAAAGCAGAGCTGGCCGTCGCTGATAAAATTGGCTTCACACTTAGAGTTGTTGATTATGCTGTTGCTGTGGGGAAAGGAGCGTTTGTTGGGGCACTTCTGGGGTTTGCAGTGGGAAATGAAGGAATGGCAATCGGAGCTGCTATTGGTGCTGGTCTTGGTGGAGTACTTGGAGGAGCAGTAAATGCAGCATGGAGCTACATATCCAGCTCATTTCCAGATGCCCTCAGGGATTCCACCTAgtccatttttgtttttgtttttatttttctggggtaatatgtaattaaaaatattatattttgtgggaatacccaaaaataaaatttctaATGCACATATATATCAATTTTGCTTTAGGAACTTCACTTAGAACTGTTTCTaggtatttacatttttaaaaccccCAGAATCTAGATATTCAGATAGTTGTCTCTGGAACAAATATTTACCTATACGCAGTGTTGTACAGtaacaaattaaatacaaaacctctttaattaagtagtttttcctCAGGAATTATCTTTTCTAAAAATGATTTTGAACAAAGCCAGAGCAGAATATTTGGGCATCTCACAGCAACACTGCTGCTTTGTCCCTGAATAAATCTGCTTTTGAATTCAAATTTTGAGTCAAAGATTAAATTTCTCTTGAGCTggcagaataattttttttaaaataaattattactttgcaacctctaaaatatattctatatAGTATATAAATGAATGTGCATGTGGTAGGATTTGCCATAGTGATTTTCTCAAaccttatttttaaatttgaatgTTGTCACACATTTTTTATGAAAGACAGACATaccaaaatattatataataccaAGCCCTTATATTGCACGCTGCTTTGTGCTTCACACTACTCATACAACAGAGGTTAACAATTAATCCTGTGGATTCAAATGCTGACGTTTTACAGTAAACACTATAAAACCTTGGGTTGACGACCTTGTTGGCATGTTCTCAAGTATTCAGCCTGTTTATGTAAAGTGTCAAACTTACCTTTAAACAGGGTTGAAAGCAGAATAATGGTAACCTgggttcaccaaaaaaaaattaattctgctGTAATTTGCTCATCTTTAACTTGTTGCAAACTTATATTTGGGTTTGGGTTTCTTTATATTGTTGAGCATATacacactacatgacaaaagtcttgtcgtcgatctcagttgtaagaagGACAAAT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-595 Predicted to enable GTP binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000157047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052091 lncRNA downstream 1845 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00053126 lncRNA downstream 203956 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 216414 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 351661 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053124 lncRNA downstream 723346 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052098 lncRNA upstream 126302 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053127 lncRNA upstream 191926 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00053128 lncRNA upstream 286697 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 286939 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052100 lncRNA upstream 295298 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00052092 mRNA downstream 1831 50128481 ~ 50139860 (-) False XLOC_026766
TCONS_00052090 mRNA downstream 5267 50127726 ~ 50136424 (-) False XLOC_026766
TCONS_00052088 mRNA downstream 14023 50123507 ~ 50127668 (-) False XLOC_026765
TCONS_00052089 mRNA downstream 17278 50123732 ~ 50124413 (-) True XLOC_026765
TCONS_00052086 mRNA downstream 23551 50076793 ~ 50118140 (-) False XLOC_026764
TCONS_00052095 mRNA upstream 28312 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052096 mRNA upstream 125108 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA upstream 125718 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052099 mRNA upstream 294590 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052102 mRNA upstream 714322 50861176 ~ 50863370 (-) False XLOC_026774
TCONS_00052087 other downstream 23729 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 326404 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1063812 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 2946457 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6047465 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 1401279 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1760632 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3542456 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4916413 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 5309499 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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