RNA id: TCONS_00053127


Basic Information

Item Value
RNA id TCONS_00053127
length 2267
lncRNA type intronic
GC content 0.33
exon number 1
gene id XLOC_026769
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50338780 ~ 50341046 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTGAAGAGGATGGTGACGGCGGGCGGCCACTTGTACGCACTTCACCAACGGTCGTGGACCTAACTGGAGCAAAGGCATTTTGGTAAGTAATAATTGGATTTCTAATATATTGTTTCAGATCAGTTATCAGTTTCATCGTCGGAAATGTAAATGTCATCGGCGTGGTTGTCAGTGTATCCATAAGCTCGATAAATATTCTTTAACGTTAGCTAAAGTTAATTTATCTCATGTTAAGTGGCACATCATGATAAATAAACtccaaaataatatgtaaattaacAGAAGACATGGTATAACACAATTTAAGGATATTTATTCGTTTTGTTTATCCTTATCGAACGTTACTGAGATTATCTCATTAAAAGTTGGACCATTTTCGTGCTGTGATGTTAACCCATAGCCTTTGCAAAGTTGATGTTTATGTAATAAAGCGAGAGATTAAGGGCATTTCAAGCAAAAACAGAATGATCACTTGGAATGATTCAAAATGTATTCTAAAATCACACCCCTCTCTAgcatgcacgcacgcatgcatgcatgcatgcatgcattggAAAGGGAGATCtttaatgtattatatttgtattatgaaCAAAAACGAAGCCTAAATTATGAGGAAATTTGCTTAATTAAAGCTAAGATATATCGAATTTGAGTATGCTGTATACATTATGTGCTTACGTGGATAAGAAAGCTCTCTACTTTTATGTGCATGTGAATAAATAAGCAATTTTAGATAAGATTGTTTCATGCCTGAACTATTAACGTTAAGTAAAAAGAGTGAACAGGTTAGAGAaatagatttaaagggatagttcacacaaaaattagtGTACAATTACTctcctcaaatggttccaaatctttatgattttttttattttttctattaaacaccaaataaaatgttttgaaaaaagcagaaaacatgtatttgactttcatagtaggaaaaactaatagCAACAAATACAAGCGTAAATGtttctaataatgtttttttttttaaatgtgcttgtcaataacagtaaaaacacaaaaaaaaccaGAATAACAGTTTGacttagggctgcacgattaattgtattattttcatGAGAACTAAATTTGTGGCCAccaatcaataattaaatatcatCGCGGTTTTACATTATAAACACCAAGGagtgtttatattttttgttattaaaaaacaGCGAATGACATCAGGTTAGATGCTTTCATTTTGGAAGAGACTTAGCAGAATCTCAAACCTTGAGCATACATCACTTGCATAAATTttgccatggacattacattaagacgcctactggtttaaaaaggcctaaattaaaagaagatggacaaatgagaacttttctgtcataaactatactaaaacaacaacttgtcaaaaataataaaaaaaaacgaaacCCCGTAAACACATTAATTACAGGCATAGAGAAAAGGGTGCTCTTTTgttatcagctgtcaatcactgcctgctcttttttttttttttcatggtcaTTGCATCTTtgctgtgtgctgtgtaaatgcagacaatcagaTATGAGTCACTTTAAAAAACGATGTAAATAATTCAGCAAAAAAATCGGACAGTCACAAAATCAAAATTGACCATCAatatctgcagtgtaaatgcagccttactgTCCTTATTTGCTGGTGAACAAAGAGTGTTGAACCAATTATAGCATTTTACTAAAGCAGAGATTTAAAAGAACACTGCCAAAATATATCTAATTATTAAATTGCACACAGCTTTTTGAAAAGGAACTTAGACTGAATTCCTCCTGGAGCCatattactaaaattatttgCTTCAATTAAAAGTCTGTATAGCTGTAAAAGCATGTCTGTCAATATGTTCTGGTTGAGttttaatgtaattgtttttttaaaatccaaTATCCACATTAACTGTtgataaaaaaagctaatttcaaacatttacataTCTGTTTCAGTGGCTGTGAGACGAAACCGCCTGACATCTGAAGCCTCAGAAAAAGACATTGACTCAACCATCAAAAGATGGCTATATCTGGCCCCGGATAGGGATGGTGGCAGGAAAGAGAAACAGCAGCGAAAGGAGAATCAGGAGAAAACTGGTTAAAGAACTTGCTTATATGGGATTTGCAACTTAAAAGAGTGCAAAATGGTGTGTGTTCTGATGTTAAAGATTTACAGTATGATGATTTCtcttgttttgtcatgttttcttaaatgtgaaataataaatattgttcagAACAGTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052098 lncRNA downstream 60839 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00052091 lncRNA downstream 198934 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00053126 lncRNA downstream 401045 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 413503 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052500 lncRNA downstream 548750 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00053128 lncRNA upstream 92505 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA upstream 92747 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00052100 lncRNA upstream 101106 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00052101 lncRNA upstream 387813 50728859 ~ 50749116 (-) True XLOC_026773
TCONS_00053129 lncRNA upstream 918785 51259831 ~ 51273723 (-) True XLOC_026777
TCONS_00052096 mRNA downstream 60821 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA downstream 60821 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052095 mRNA downstream 161122 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052093 mRNA downstream 191620 50128569 ~ 50147160 (-) False XLOC_026766
TCONS_00052094 mRNA downstream 191926 50141691 ~ 50146854 (-) True XLOC_026766
TCONS_00052099 mRNA upstream 100398 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052102 mRNA upstream 520130 50861176 ~ 50863370 (-) False XLOC_026774
TCONS_00052103 mRNA upstream 520130 50861176 ~ 50863456 (-) False XLOC_026774
TCONS_00052104 mRNA upstream 520467 50861513 ~ 50865079 (-) True XLOC_026774
TCONS_00052105 mRNA upstream 610157 50951203 ~ 50954607 (-) False XLOC_026775
TCONS_00052087 other downstream 220818 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 523493 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1260901 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 3143546 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6244554 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 1207087 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1566440 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3348264 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4722221 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 5115307 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

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