RNA id: TCONS_00052501


Basic Information

Item Value
RNA id TCONS_00052501
length 631
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_026771
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50433793 ~ 50434423 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttatgtgtgtcaacgttgtggaggagagtagagccagtgtatgagttaaagatgaacaatgaactgctgatgttattctgtatTCTATTATATTGTGTCTTTATTTAAAGACAgcagctgtttagttgctgatgcagtctgAATCTCTCTGAtaattccagatttacatgtatgtgtgctacTGAGAAATATAAGACATTAGGgttaaataaaacttttctaattaactaaaacaaGTTATCATTATGAGtgtgcttctaagcatatatagcacaatacttcataaactcattcagcagttggccaatttgaggcagttgctttcagtgaacaaaatgagttcacttgagtattgtgtatatcaatgtagtccatgtatttttacagcaacatactgtaaaataacagtacattgctggcaactgcagctgccagtattttaccgctttttaacgggacaatttttaacagtgtatcgTTTAGGATACAGCTTacacagtttctcaagcagtttgtgatgcattttggaaacaggagataagcacctggtctaatgcgccacctggctttaGAAACCTGTTCTCAAATACTTATTATTTGAGTAGCACACATaatctgaatgccttcg

Function

GO:

id name namespace
GO:0050817 coagulation biological_process
GO:0050818 regulation of coagulation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053127 lncRNA downstream 92747 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00052098 lncRNA downstream 155852 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00052091 lncRNA downstream 293947 50128266 ~ 50139846 (-) False XLOC_026766
TCONS_00053126 lncRNA downstream 496058 49934636 ~ 49937735 (-) True XLOC_026761
TCONS_00053125 lncRNA downstream 508516 49921198 ~ 49925277 (-) True XLOC_026760
TCONS_00052100 lncRNA upstream 7729 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00052101 lncRNA upstream 294436 50728859 ~ 50749116 (-) True XLOC_026773
TCONS_00053129 lncRNA upstream 825408 51259831 ~ 51273723 (-) True XLOC_026777
TCONS_00053130 lncRNA upstream 1011067 51445490 ~ 51448961 (-) True XLOC_026778
TCONS_00053131 lncRNA upstream 1191180 51625603 ~ 51660056 (-) True XLOC_026780
TCONS_00052096 mRNA downstream 155834 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA downstream 155834 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052095 mRNA downstream 256135 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052093 mRNA downstream 286633 50128569 ~ 50147160 (-) False XLOC_026766
TCONS_00052099 mRNA upstream 7021 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052102 mRNA upstream 426753 50861176 ~ 50863370 (-) False XLOC_026774
TCONS_00052103 mRNA upstream 426753 50861176 ~ 50863456 (-) False XLOC_026774
TCONS_00052104 mRNA upstream 427090 50861513 ~ 50865079 (-) True XLOC_026774
TCONS_00052105 mRNA upstream 516780 50951203 ~ 50954607 (-) False XLOC_026775
TCONS_00052087 other downstream 315831 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 618506 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1355914 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 3238559 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6339567 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 1113710 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1473063 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 3254887 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4628844 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 5021930 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

//