RNA id: TCONS_00052101


Basic Information

Item Value
RNA id TCONS_00052101
length 650
lncRNA type lincRNA
GC content 0.48
exon number 2
gene id XLOC_026773
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50728859 ~ 50749116 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGAGGTGGTACATTTGATGGAGaGGTTTACATAATCCTGGactaggccgtatcctgagcagttGCTGTGGTGGTcaaggaggagtggagagcatgagactgatccaTTGACAGACGAGTTCTCGCATTGATCTTGAAAGGACAGCCTATACACCAGCTGGTGACCTCTCCCAGATGCAGCTTCTCCACGAAGGATgtccagcctccggcacctaaactgcagctctgcacaagacgtttaaCCATAGGACAAATGGTCATGCccagctgagcctggtttctctctaagttttttaattcttcattttcgccaattggtaaagtttttttttttcctcgccgctgtcgccactggcttggaCTGACATTTCAGTTTACtacaatcttctatgtgaagctgctttgacacaatctacattgtaatagTGCTACAGAAATGAAGTTGAACCAAATTACCACCTGAGTTGCTTAAGCTGCTACAACCACCAGAGCTCTTATTGCTAGGGctgccaccaccaccaccagttcTGCCAGATTCTCCTTCACTCTCAGAGCTGCCAGAATCTCCTTCGCTCCTAGAGGGGCGCTCTGTCACAAGCACCAGCAATCCAGCAACTGCGGATCTCAAGACAACTACACACACTATCG

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154375

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052100 lncRNA downstream 285559 50442152 ~ 50443300 (-) True XLOC_026772
TCONS_00053128 lncRNA downstream 290581 50433551 ~ 50438278 (-) True XLOC_026770
TCONS_00052501 lncRNA downstream 294436 50433793 ~ 50434423 (-) True XLOC_026771
TCONS_00053127 lncRNA downstream 387813 50338780 ~ 50341046 (-) True XLOC_026769
TCONS_00052098 lncRNA downstream 450918 50273156 ~ 50277941 (-) True XLOC_026768
TCONS_00053129 lncRNA upstream 510715 51259831 ~ 51273723 (-) True XLOC_026777
TCONS_00053130 lncRNA upstream 696374 51445490 ~ 51448961 (-) True XLOC_026778
TCONS_00053131 lncRNA upstream 876487 51625603 ~ 51660056 (-) True XLOC_026780
TCONS_00053132 lncRNA upstream 1143603 51892719 ~ 51897783 (-) True XLOC_026781
TCONS_00052112 lncRNA upstream 1314885 52064001 ~ 52090004 (-) True XLOC_026784
TCONS_00052099 mRNA downstream 285252 50441444 ~ 50443607 (-) False XLOC_026772
TCONS_00052096 mRNA downstream 450900 50271962 ~ 50277959 (-) False XLOC_026768
TCONS_00052097 mRNA downstream 450900 50272572 ~ 50277959 (-) False XLOC_026768
TCONS_00052095 mRNA downstream 551201 50175166 ~ 50177658 (-) True XLOC_026767
TCONS_00052093 mRNA downstream 581699 50128569 ~ 50147160 (-) False XLOC_026766
TCONS_00052102 mRNA upstream 112060 50861176 ~ 50863370 (-) False XLOC_026774
TCONS_00052103 mRNA upstream 112060 50861176 ~ 50863456 (-) False XLOC_026774
TCONS_00052104 mRNA upstream 112397 50861513 ~ 50865079 (-) True XLOC_026774
TCONS_00052105 mRNA upstream 202087 50951203 ~ 50954607 (-) False XLOC_026775
TCONS_00052106 mRNA upstream 202089 50951205 ~ 50998577 (-) True XLOC_026775
TCONS_00052087 other downstream 610897 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 913572 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 1650980 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 3533625 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 6634633 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052109 other upstream 799017 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 1158370 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 2940194 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 4314151 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 4707237 55456353 ~ 55481157 (-) True XLOC_026827

Expression Profile

//