RNA id: TCONS_00052112


Basic Information

Item Value
RNA id TCONS_00052112
length 670
lncRNA type antisense
GC content 0.39
exon number 3
gene id XLOC_026784
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52064001 ~ 52090004 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGTGACAGCAGGTGTTCAGCCAGTTTCTGAGGGCTGGAGAAATCCTTCACGTGGATGAAAGAATCTTTAGGCACAAATCTCTCATATATGTATCTTGGAGCCCCAAGAGCCACCGGCACTGATCCAAAGGTCCATATTGAAAAGGATGGCCAAATGATCAGATAACCATGGGCCTACAGAGATTGTCATGTCTGTGCTGTTTGTTATGACCGATAAGAAAATGGCAAAGTATATCAGCTCATATGGTGACCAACAAGATGTCATGTCCTTCTGTCAACAAACAGCGGCCTTTTCTGATAAAAGAGTCCCTAATAAAGAATTTAAGAGATAAAACTGAATCAAGGAAACTTGAGTTGGGTCAAAGTCATTTAAAGCATTGCAAGGTTTGGGGATGTGTCTTCCCTAAGAAAAAGAATGTAAAGACAAGATAGAAAAAGAAATTTCCAGTAAGAACCAACAGGAGAGTTGGAATTGGATGGCTTCACAATACTTGTATTTAATACCGGCATGTGAGAGAGGTTTTCTTACAGATGAAGAATCTTTATCTGATGAGGATAAAGAGCAATGGAATGAACATTCATTTCTAAAGTATTGATTAGATAGTGATGCAGAGAGATCTGCTGCACCATTGCCATTGTATGGAtgtaaaagtgacttttatcaaacaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166585

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053132 lncRNA downstream 166218 51892719 ~ 51897783 (-) True XLOC_026781
TCONS_00053131 lncRNA downstream 403945 51625603 ~ 51660056 (-) True XLOC_026780
TCONS_00053130 lncRNA downstream 615040 51445490 ~ 51448961 (-) True XLOC_026778
TCONS_00053129 lncRNA downstream 790278 51259831 ~ 51273723 (-) True XLOC_026777
TCONS_00052101 lncRNA downstream 1314885 50728859 ~ 50749116 (-) True XLOC_026773
TCONS_00052502 lncRNA upstream 104619 52194623 ~ 52195739 (-) False XLOC_026785
TCONS_00053133 lncRNA upstream 104650 52194654 ~ 52196824 (-) False XLOC_026785
TCONS_00052503 lncRNA upstream 105443 52195447 ~ 52196823 (-) False XLOC_026785
TCONS_00052504 lncRNA upstream 105655 52195659 ~ 52196823 (-) True XLOC_026785
TCONS_00052113 lncRNA upstream 125041 52215045 ~ 52217224 (-) False XLOC_026786
TCONS_00052110 mRNA downstream 151982 51899578 ~ 51912019 (-) True XLOC_026782
TCONS_00052108 mRNA downstream 921059 51030667 ~ 51142942 (-) True XLOC_026776
TCONS_00052107 mRNA downstream 954715 51030667 ~ 51109286 (-) False XLOC_026776
TCONS_00052106 mRNA downstream 1065424 50951205 ~ 50998577 (-) True XLOC_026775
TCONS_00052105 mRNA downstream 1109394 50951203 ~ 50954607 (-) False XLOC_026775
TCONS_00052116 mRNA upstream 517035 52607039 ~ 52614747 (-) True XLOC_026787
TCONS_00052117 mRNA upstream 551733 52641737 ~ 52644737 (-) True XLOC_026788
TCONS_00052118 mRNA upstream 557140 52647144 ~ 52661242 (-) True XLOC_026789
TCONS_00052119 mRNA upstream 577695 52667699 ~ 52674118 (-) False XLOC_026790
TCONS_00052120 mRNA upstream 578658 52668662 ~ 52674089 (-) True XLOC_026790
TCONS_00052111 other downstream 156439 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 515751 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 1946039 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 2248714 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 2986122 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052136 other upstream 1599306 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 2973263 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 3366349 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 3554205 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 4390808 56480812 ~ 56574965 (-) True XLOC_026833