Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053133 |
| length | 2171 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | XLOC_026785 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 52194623 ~ 52196824 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0019222 | regulation of metabolic process | biological_process |
| GO:0080090 | regulation of primary metabolic process | biological_process |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0051171 | regulation of nitrogen compound metabolic process | biological_process |
| GO:0009889 | regulation of biosynthetic process | biological_process |
| GO:0097659 | nucleic acid-templated transcription | biological_process |
| GO:0031323 | regulation of cellular metabolic process | biological_process |
| GO:0031326 | regulation of cellular biosynthetic process | biological_process |
| GO:0051252 | regulation of RNA metabolic process | biological_process |
| GO:1903506 | regulation of nucleic acid-templated transcription | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0060255 | regulation of macromolecule metabolic process | biological_process |
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0032774 | RNA biosynthetic process | biological_process |
| GO:0010556 | regulation of macromolecule biosynthetic process | biological_process |
| GO:2000112 | regulation of cellular macromolecule biosynthetic process | biological_process |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| GO:0140110 | transcription regulator activity | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052112 | lncRNA | downstream | 104650 | 52064001 ~ 52090004 (-) | True | XLOC_026784 |
| TCONS_00053132 | lncRNA | downstream | 296871 | 51892719 ~ 51897783 (-) | True | XLOC_026781 |
| TCONS_00053131 | lncRNA | downstream | 534598 | 51625603 ~ 51660056 (-) | True | XLOC_026780 |
| TCONS_00053130 | lncRNA | downstream | 745693 | 51445490 ~ 51448961 (-) | True | XLOC_026778 |
| TCONS_00053129 | lncRNA | downstream | 920931 | 51259831 ~ 51273723 (-) | True | XLOC_026777 |
| TCONS_00052113 | lncRNA | upstream | 18221 | 52215045 ~ 52217224 (-) | False | XLOC_026786 |
| TCONS_00052114 | lncRNA | upstream | 18221 | 52215045 ~ 52217251 (-) | False | XLOC_026786 |
| TCONS_00052115 | lncRNA | upstream | 19367 | 52216191 ~ 52217213 (-) | True | XLOC_026786 |
| TCONS_00053134 | lncRNA | upstream | 878023 | 53074847 ~ 53076760 (-) | False | XLOC_026793 |
| TCONS_00053136 | lncRNA | upstream | 878023 | 53074847 ~ 53076828 (-) | False | XLOC_026793 |
| TCONS_00052110 | mRNA | downstream | 282635 | 51899578 ~ 51912019 (-) | True | XLOC_026782 |
| TCONS_00052108 | mRNA | downstream | 1051712 | 51030667 ~ 51142942 (-) | True | XLOC_026776 |
| TCONS_00052107 | mRNA | downstream | 1085368 | 51030667 ~ 51109286 (-) | False | XLOC_026776 |
| TCONS_00052106 | mRNA | downstream | 1196077 | 50951205 ~ 50998577 (-) | True | XLOC_026775 |
| TCONS_00052105 | mRNA | downstream | 1240047 | 50951203 ~ 50954607 (-) | False | XLOC_026775 |
| TCONS_00052116 | mRNA | upstream | 410215 | 52607039 ~ 52614747 (-) | True | XLOC_026787 |
| TCONS_00052117 | mRNA | upstream | 444913 | 52641737 ~ 52644737 (-) | True | XLOC_026788 |
| TCONS_00052118 | mRNA | upstream | 450320 | 52647144 ~ 52661242 (-) | True | XLOC_026789 |
| TCONS_00052119 | mRNA | upstream | 470875 | 52667699 ~ 52674118 (-) | False | XLOC_026790 |
| TCONS_00052120 | mRNA | upstream | 471838 | 52668662 ~ 52674089 (-) | True | XLOC_026790 |
| TCONS_00052111 | other | downstream | 287092 | 51907486 ~ 51907562 (-) | True | XLOC_026783 |
| TCONS_00052109 | other | downstream | 646404 | 51548133 ~ 51548250 (-) | True | XLOC_026779 |
| TCONS_00052087 | other | downstream | 2076692 | 50104071 ~ 50117962 (-) | True | XLOC_026764 |
| TCONS_00052082 | other | downstream | 2379367 | 49815197 ~ 49815287 (-) | False | XLOC_026760 |
| TCONS_00052070 | other | downstream | 3116775 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
| TCONS_00052136 | other | upstream | 1492486 | 53689310 ~ 53689428 (-) | True | XLOC_026804 |
| TCONS_00052148 | other | upstream | 2866443 | 55063267 ~ 55079244 (-) | True | XLOC_026816 |
| TCONS_00052166 | other | upstream | 3259529 | 55456353 ~ 55481157 (-) | True | XLOC_026827 |
| TCONS_00052174 | other | upstream | 3447385 | 55644209 ~ 55650417 (-) | False | XLOC_026829 |
| TCONS_00052186 | other | upstream | 4283988 | 56480812 ~ 56574965 (-) | True | XLOC_026833 |
