RNA id: TCONS_00052120


Basic Information

Item Value
RNA id TCONS_00052120
length 672
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_026790
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52667699 ~ 52674118 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGAAATTTGAGGTTGTCTGTCGAGAAGAAGATAACACTGCCGTTGGGGGATCTTACgggtattttttttaactttctccGGGATCCCGTTAATGACAGACACCATGAACACAGTCGATTTTCAGACACATTTAACGGCTATAATTGAAATCATGGCGAGAAGCGCTGCTGCGGAAATAAGCAAACTATTCGAGGAGAACTCACTGCTGCTGCGAATGGAGATTTTACGATGTTCAAACGAAAACGAGTCTCTAAAAAAGAAATGTCAGTTTCTGGAGACTGAACTTCAGTCCGCTCGGGAAACCGCAGGGGAGATGAACGGGACACAAGCTCTTCACAGCGTGACAGAAACTGGACAACCTCCCACAATCGACAATGTGTTTGGTAAGGAATGGTGCATGAACCTCTGGAGACAGGAGGAGTCCAGGGTTGGAGAGCAAGAGGATGCACAAAAGCCAATAGATTTGCTGGGTGAAGAACCAGATGTGATTATGATTAAGGATGAGTCGATGAAGAATGCCAGTTGCTCTTTAAACAGTATACCGGAGGACAACAAAAGCAGCAGTCTGACAGcatgtagattgctgaagcactcgtcagaaaaatgatgggaacacagcacaaggctggggctataatgctgagGACCAGCGATGTCCAATGATGAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052114 lncRNA downstream 451411 52215045 ~ 52217251 (-) False XLOC_026786
TCONS_00052113 lncRNA downstream 451438 52215045 ~ 52217224 (-) False XLOC_026786
TCONS_00052115 lncRNA downstream 451449 52216191 ~ 52217213 (-) True XLOC_026786
TCONS_00053133 lncRNA downstream 471838 52194654 ~ 52196824 (-) False XLOC_026785
TCONS_00053134 lncRNA upstream 400758 53074847 ~ 53076760 (-) False XLOC_026793
TCONS_00053136 lncRNA upstream 400758 53074847 ~ 53076828 (-) False XLOC_026793
TCONS_00053135 lncRNA upstream 400758 53074847 ~ 53076828 (-) False XLOC_026793
TCONS_00053138 lncRNA upstream 400758 53074847 ~ 53076911 (-) False XLOC_026793
TCONS_00053137 lncRNA upstream 400758 53074847 ~ 53076911 (-) True XLOC_026793
TCONS_00052118 mRNA downstream 7420 52647144 ~ 52661242 (-) True XLOC_026789
TCONS_00052117 mRNA downstream 23925 52641737 ~ 52644737 (-) True XLOC_026788
TCONS_00052116 mRNA downstream 53915 52607039 ~ 52614747 (-) True XLOC_026787
TCONS_00052110 mRNA downstream 756643 51899578 ~ 51912019 (-) True XLOC_026782
TCONS_00052108 mRNA downstream 1525720 51030667 ~ 51142942 (-) True XLOC_026776
TCONS_00052121 mRNA upstream 2488 52676577 ~ 52683241 (-) True XLOC_026791
TCONS_00052122 mRNA upstream 218582 52892671 ~ 52899394 (-) True XLOC_026792
TCONS_00052123 mRNA upstream 406938 53081027 ~ 53091946 (-) False XLOC_026794
TCONS_00052124 mRNA upstream 409105 53083194 ~ 53092509 (-) True XLOC_026794
TCONS_00052125 mRNA upstream 423498 53097587 ~ 53114299 (-) True XLOC_026795
TCONS_00052111 other downstream 761100 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 1120412 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 2550700 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 2853375 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 3590783 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052136 other upstream 1015221 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 2389178 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 2782264 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 2970120 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 3806723 56480812 ~ 56574965 (-) True XLOC_026833

Expression Profile

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