RNA id: TU2097208


Basic Information

Item Value
RNA id TU2097208
length 495
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1831088
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12545711 ~ 12546205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGGCATGTGCCGATATAGCTTCTGTTAAAATAAAGGACACACAGCACAAAATTTCCCTATATGCAGACgatgttcttttgtttttgtccaagccTAAAACTTCTATTCCACCCTTACTTAACTTGATAAACACATTTGGCTCCTTCTCTGGCTACAAGATAAACTGGCAAAAAAGTGAGTTGATGCCAATATCACGGCCTGTGGATATGCAATTTCTGCAATCTACCCCGTTTAGAACAGTGATGGACAAGTTCACAAGCCTTGGCATTGTAGTGACAGGAGACCTTGATCAGCTATTGAAAGCGAATTGGGACATGAAAATATATCAGCTTaaacaaaatatagatttttggaaAACTCTGCCTATCTCCTTGGTTGGTCGTATAAACGCTATTAAAATGGTTGTCCTACCCAGGTTTCTCTACCTCTTCCAATGTCTACCCAATTTCATACCACAAAGCTATTTTAAGAAACTGGATTCAATAGTAACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2097203 lncRNA downstream 6900 12538577 ~ 12538811 (-) True G1831083
TU2097016 lncRNA downstream 64362 12481049 ~ 12481349 (-) True G1830906
TU2097001 lncRNA downstream 72365 12473089 ~ 12473346 (-) True G1830891
TU2096990 lncRNA downstream 79749 12465744 ~ 12465962 (-) True G1830880
TU2096978 lncRNA downstream 84556 12451877 ~ 12461155 (-) True G1830868
TU2097212 lncRNA upstream 4712 12550917 ~ 12551156 (-) True G1831092
TU2097213 lncRNA upstream 6176 12552381 ~ 12552599 (-) True G1831093
TU2097215 lncRNA upstream 7176 12553381 ~ 12553730 (-) True G1831095
TU2097216 lncRNA upstream 7641 12553846 ~ 12554124 (-) True G1831096
TU2097178 lncRNA upstream 34611 12580816 ~ 12590639 (-) False LOC110502275
XM_021580178.2 mRNA downstream 16193 12511375 ~ 12529518 (-) True LOC110502271
XM_021580177.2 mRNA downstream 20524 12511375 ~ 12525187 (-) False LOC110502271
XM_021580176.2 mRNA downstream 102509 12413909 ~ 12443202 (-) False LOC110502270
XM_036960345.1 mRNA downstream 102509 12413909 ~ 12443202 (-) True LOC110502270
XM_021580175.2 mRNA downstream 133901 12392924 ~ 12411810 (-) False LOC110502269
XM_021580180.2 mRNA upstream 14200 12560405 ~ 12575203 (-) False LOC110502273
XM_036960640.1 mRNA upstream 14200 12560405 ~ 12576330 (-) True LOC110502273
XM_036960641.1 mRNA upstream 39105 12585310 ~ 12638670 (-) False LOC110502275
XM_036960643.1 mRNA upstream 39105 12585310 ~ 12638670 (-) False LOC110502275
XM_036960645.1 mRNA upstream 39105 12585310 ~ 12638670 (-) False LOC110502275
TU2096928 other downstream 150064 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 592078 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 592078 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 742580 11800683 ~ 11803131 (-) False LOC118943913
TU2095870 other downstream 811785 11733430 ~ 11733926 (-) True G1829918
TU2097183 other upstream 34611 12580816 ~ 12589700 (-) True LOC110502275
TU2099870 other upstream 1974144 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2620004 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2952549 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 3119998 15666203 ~ 15671180 (-) True tmem254

Expression Profile