RNA id: TU2098593


Basic Information

Item Value
RNA id TU2098593
length 561
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1832362
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13183216 ~ 13183839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcttggggtatgtctctatcagttttgcacatcgagagaatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattttagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaagtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgcccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098576 lncRNA downstream 4870 13174191 ~ 13178346 (-) True G1832348
TU2098556 lncRNA downstream 117074 13065910 ~ 13066142 (-) True G1832329
TU2097608 lncRNA downstream 204990 12978002 ~ 12978226 (-) True G1831475
TU2097577 lncRNA downstream 225025 12957980 ~ 12958191 (-) True G1831444
TU2097521 lncRNA downstream 275228 12907782 ~ 12907988 (-) True G1831388
TU2098616 lncRNA upstream 46182 13230021 ~ 13239763 (-) True G1832384
TU2098675 lncRNA upstream 155723 13339562 ~ 13342191 (-) True G1832439
TU2098708 lncRNA upstream 197549 13381388 ~ 13381633 (-) True G1832472
TU2098709 lncRNA upstream 197879 13381718 ~ 13381920 (-) True G1832473
TU2098716 lncRNA upstream 205172 13389011 ~ 13389298 (-) True G1832480
XM_021580212.2 mRNA downstream 15337 13148827 ~ 13167879 (-) False LOC110502288
XM_036959707.1 mRNA downstream 15337 13148827 ~ 13167879 (-) False LOC110502288
XM_021580213.2 mRNA downstream 19535 13148832 ~ 13163681 (-) True LOC110502288
XM_021580206.2 mRNA downstream 36866 13123422 ~ 13146350 (-) False LOC110502284
XM_021580207.2 mRNA downstream 36866 13136688 ~ 13146350 (-) True LOC110502284
XM_021580217.2 mRNA upstream 167507 13351346 ~ 13361102 (-) True fignl1
XM_021580219.2 mRNA upstream 219708 13403547 ~ 13405114 (-) True LOC110502296
XM_021580224.2 mRNA upstream 304255 13488094 ~ 13547895 (-) False LOC110502298
XM_021580221.2 mRNA upstream 304255 13488094 ~ 13549306 (-) False LOC110502298
XM_021580223.2 mRNA upstream 304255 13488094 ~ 13549306 (-) False LOC110502298
TU2097183 other downstream 593516 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 787569 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1229583 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1229583 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1380085 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1336510 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 1982370 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2314915 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2482364 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2561799 15745638 ~ 15747735 (-) True G1835092

Expression Profile