RNA id: TU2098675


Basic Information

Item Value
RNA id TU2098675
length 2057
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1832439
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13339562 ~ 13342191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTATGTAAAATATCCTTTATTGATATTTTGCAAGCATGATATATGGGTGAAAAGACTTTAAAAGTTTAGTCCAAATTGAGAGTCACATTTTCTTTGCCACCGAGGTAAAAAGCTGGGACAAAATCGAATCCCATCCGTACATTATATCAAACAAACATCTTTCAGTAAAAACACTCTAGTTCGGTCATTTATTCAACTCAAATTAATGTATCACATTTGATTAATGGTAGGGAATGTTTGAACTAAATAAATCAAACGGGAAACCCTAACACCAACTGTaataaattacaaaaaaaaaacacggcataaataatatataaaaagtccatataaaaaaaacatttaagtaAAATAAGGAGCTAAATTTCCTTGGGTGGAATTCAAAAAGGTTATTACAGTGACGAATAACACTGTAAAGTTATAACTTAAATGTCAAGCAATACCTTGTATTCTTTAGAATAAAATATACAGATATTCCTGTCTAGGTAGGCTATCAGAAAAACAGACATGTATTTAATGTACACAGACATCAAAGGGTAGATGAATGACTTAAAACTATACAGTATGTGACACATGATACTTACTGCTGAGGCACAATGATTTTTTTAAGTTGTTTGTTCAGTTATTTGAACACCTTTTTGTTTTCTAAAAAAGCAGATCAAGGAATAGTTTTTTTTTCCTCCTGAACATGtgaaatacacattaattagatttgTTCTTCAACATGCAATTTCTTGACAATGTATaaaaatcgtgtgtgtgtgtttagtacaTGTGTATGTATGTTCATGAGTAAGTGTGTGTTCAGTTGGCAACTCAGTAGCGATGCTCCCCTCGGGTCATGTGTGACGAAAACTCGTAACGGTCCTGACTGCGATGGCCACAGAGGTTGCACTCGAAGGGGTCTCGGAAGCCATGGCAGCCCATGTGGATGGTGTACATCACATGGTCTAGGAAGAGGATGCGGCAGTGTTCACAGCGATATGCCCTCAcctgctccccctctccactcagcACCTTGAACCCCTCCGAGGCAATCTCGATACTGGCCCGCATGGCCTCGTACTGCCGCTGCTGCTCCTCCTTCACCAGGGGCAGCACGCCATTACGTACCCCGGACGTGATGTGGTTTGTCAGGTAGATGAGGCCTGAGGCCCCGACACCTGCCTTCTCTTCATTGTTGCTCTCCGTGTCGGTGGAATCCTGGCCACTGTGGCTGGGGGAGCCGTCCTTCTCGCTGGAGGCTGACTTGGACTTTGCGAGCAACAGAAGATTTTCGGCTGCGCTGTCCTTGGCTGACAGGCCGTGGCCCTCTGCAGGGGGCTTGTGGAGGGGGTACATGGAGCCCATGACCCCCATGTCAGAGGAGGTTGGGGATGTCTGGATGAGCGGTCGGAGTGACTCGGCACCCAGGTAGTTGATGGCACTGTTGATGGCCTGGTCGATGACATGAGGCTGCATCAGTTCCCCCGGGCCACCCTCGAAGGAGATGTTGGAGAAGCGTTTCTCACCTACAAACTTCTGTGGCATAGTGCTCTTACGTTTGGCTACATTATTAGCTAGTCTGTCTAGCACCAAGGCTCTCTTAGATCCCATCTGGCTTAAGTCTTCCCTCTGCTCATTCTGGTTGCTTTCTTCCTTTACTACTGGAAAGCAAGACAGAAAAGTAGGTTTCAGAATCAAAGTAGTGAAATCTGACCTGATAAAAAGTATAATTACTGTATAACAGGATCTTGTTACAATTTGCTAAAGCATCCCTCCCTGACTGTAGATACATGGAACAATGATGAGGAGGCCTTTATTGACAGATGTGCTGCAGTTGGTATACATTGGCCTTACTCACTAAGCAAAGCAGAGTGATCAGCCTTTCTCATCATTTCCTCTTCTTAACCTCTGCACTCTTGCCCCACTTCCTAATGTTGTCAGTTCAGTAGGCTACATGTACATCCGCCCACAATGGATCTCTCCTTTGTATAAAGAGGTCATTTTTTACGTGAGCTACATTATCTTACTATAAAAAGCTACATTATCTTACTATAAAAAGCTACATTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098616 lncRNA downstream 99799 13230021 ~ 13239763 (-) True G1832384
TU2098593 lncRNA downstream 155723 13183216 ~ 13183839 (-) True G1832362
TU2098576 lncRNA downstream 161216 13174191 ~ 13178346 (-) True G1832348
TU2098556 lncRNA downstream 273420 13065910 ~ 13066142 (-) True G1832329
TU2097608 lncRNA downstream 361336 12978002 ~ 12978226 (-) True G1831475
TU2098708 lncRNA upstream 39197 13381388 ~ 13381633 (-) True G1832472
TU2098709 lncRNA upstream 39527 13381718 ~ 13381920 (-) True G1832473
TU2098716 lncRNA upstream 46820 13389011 ~ 13389298 (-) True G1832480
TU2098719 lncRNA upstream 49449 13391640 ~ 13395954 (-) True G1832482
TU2098720 lncRNA upstream 54611 13396802 ~ 13397308 (-) True G1832483
XR_002470311.2 mRNA downstream 142369 13169146 ~ 13197193 (-) False mocos
XM_021580209.2 mRNA downstream 142370 13178743 ~ 13197192 (-) False mocos
XM_021580210.2 mRNA downstream 142370 13178743 ~ 13197192 (-) True mocos
XM_021580212.2 mRNA downstream 171683 13148827 ~ 13167879 (-) False LOC110502288
XM_036959707.1 mRNA downstream 171683 13148827 ~ 13167879 (-) False LOC110502288
XM_021580217.2 mRNA upstream 9155 13351346 ~ 13361102 (-) True fignl1
XM_021580219.2 mRNA upstream 61356 13403547 ~ 13405114 (-) True LOC110502296
XM_021580224.2 mRNA upstream 145903 13488094 ~ 13547895 (-) False LOC110502298
XM_021580221.2 mRNA upstream 145903 13488094 ~ 13549306 (-) False LOC110502298
XM_021580223.2 mRNA upstream 145903 13488094 ~ 13549306 (-) False LOC110502298
TU2097183 other downstream 749862 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 943915 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1385929 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1385929 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1536431 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1178158 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 1824018 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2156563 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2324012 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2403447 15745638 ~ 15747735 (-) True G1835092

Expression Profile