RNA id: TU2098800


Basic Information

Item Value
RNA id TU2098800
length 454
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G1832558
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13672516 ~ 13685923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttcgcaaggcactgtattggctTTTTTTGTGGGTGTGTTGAATCAAACATAAATACAGTAAATAATGTTCGAGGCCAGTACATTAAAACCACAGTATTTTTTTGTTATCAAGGATATGAGCAAAAATAAGTTACTCTGgtcttttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttggaccttgtcagctcaggggtttgaacttgcaaccttccggttactcaaccaacgctcgaaccactaggctaccctgccactcaTCTTAATGCTGTGCCATGATCACAATGTTACTGCCCAACAATACAACTGTAGTAGGCATGCCTGCATGACCCGTGTTGACAAATAATTATTTATCATTAAAGTTATAAACATTGTTAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098833 lncRNA downstream 112127 13560090 ~ 13560389 (-) True G1832590
TU2098720 lncRNA downstream 275208 13396802 ~ 13397308 (-) True G1832483
TU2098719 lncRNA downstream 276562 13391640 ~ 13395954 (-) True G1832482
TU2098716 lncRNA downstream 283218 13389011 ~ 13389298 (-) True G1832480
TU2098709 lncRNA downstream 290596 13381718 ~ 13381920 (-) True G1832473
TU2099031 lncRNA upstream 189755 13875678 ~ 13877676 (-) False G1832769
TU2099032 lncRNA upstream 189755 13875678 ~ 13877676 (-) True G1832769
TU2099063 lncRNA upstream 268475 13954398 ~ 13954643 (-) True G1832798
TU2098983 lncRNA upstream 281727 13967650 ~ 14061826 (-) True LOC110502308
TU2099191 lncRNA upstream 437415 14123338 ~ 14126003 (-) True G1832918
XM_021580221.2 mRNA downstream 123210 13488094 ~ 13549306 (-) False LOC110502298
XR_005039136.1 mRNA upstream 16620 13702543 ~ 13703759 (-) True LOC118943841
XM_021580241.2 mRNA upstream 73730 13759653 ~ 13824180 (-) False LOC110502305
XM_021580240.2 mRNA upstream 73730 13759653 ~ 13824191 (-) True LOC110502305
XM_036959678.1 mRNA upstream 205075 13890998 ~ 13944823 (-) False LOC110502306
XM_036959676.1 mRNA upstream 205075 13890998 ~ 13944830 (-) True LOC110502306
TU2097183 other downstream 1082816 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 1276869 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1718883 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1718883 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1869385 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 834426 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 1480286 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 1812831 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 1980280 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2059715 15745638 ~ 15747735 (-) True G1835092

Expression Profile