RNA id: TU2099707



Basic Information


Item Value
RNA id TU2099707
length 408
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1833412
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 14285687 ~ 14338025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaacatctacaatggaatggttcaaaaataaacatatccaggtgttataatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgcgctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataatcttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttgttccacttcatgattgtgtcccacttgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2099275 lncRNA downstream 36573 14248772 ~ 14249114 (-) True G1833001
TU2099191 lncRNA downstream 159684 14123338 ~ 14126003 (-) True G1832918
TU2098983 lncRNA downstream 223861 13967650 ~ 14061826 (-) True LOC110502308
TU2099063 lncRNA downstream 331044 13954398 ~ 13954643 (-) True G1832798
TU2099031 lncRNA downstream 408011 13875678 ~ 13877676 (-) False G1832769
TU2099855 lncRNA upstream 163670 14501695 ~ 14501931 (-) True G1833555
TU2099869 lncRNA upstream 181539 14519564 ~ 14519813 (-) True G1833569
TU2099871 lncRNA upstream 183747 14521772 ~ 14522012 (-) True G1833571
TU2100019 lncRNA upstream 398249 14736274 ~ 14736507 (-) True G1833710
TU2100026 lncRNA upstream 408783 14746808 ~ 14747171 (-) True G1833716
XM_036959888.1 mRNA downstream 305917 13967514 ~ 13979770 (-) False LOC110502308
XM_021580244.2 mRNA downstream 307435 13967514 ~ 13978252 (-) False LOC110502308
XM_036959676.1 mRNA downstream 340857 13890998 ~ 13944830 (-) True LOC110502306
XM_036959678.1 mRNA downstream 340864 13890998 ~ 13944823 (-) False LOC110502306
XM_021580240.2 mRNA downstream 461496 13759653 ~ 13824191 (-) True LOC110502305
XM_021580246.2 mRNA upstream 38211 14376236 ~ 14467063 (-) True LOC110502312
XM_036959857.1 mRNA upstream 158977 14497002 ~ 14757755 (-) False LOC110502313
XM_036959858.1 mRNA upstream 158977 14497002 ~ 14757755 (-) True LOC110502313
XR_005039294.1 mRNA upstream 191233 14529258 ~ 14529355 (-) True LOC118943949
XM_036960549.1 mRNA upstream 474415 14812440 ~ 14908222 (-) True LOC110503081
TU2097183 other downstream 1695987 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 1890040 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 2332054 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 2332054 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 2482556 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 182324 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 828184 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 1160729 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 1328178 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 1407613 15745638 ~ 15747735 (-) True G1835092

Expression Profile