RNA id: TU2099871



Basic Information


Item Value
RNA id TU2099871
length 241
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1833571
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 14521772 ~ 14522012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCGTTTTCTTCTTCTTATGATTTTGAGTCCAAGTACCTATTGAGGTAGACAGAGGAAGTTGTTTGGTTTCGATGATGATAAATGGGTTTGGTTTGTGTGTTGGCTGAGTCCTCTGGCTGAGACTGCTTtgctgggagagagtgagagagggaagagcaATAGCGGCGAGAGAGATGAAATAGTGTTGATCCGgcgaaaggagagagagagcagatttAAACTATTACCTGTTACCATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2099869 lncRNA downstream 1959 14519564 ~ 14519813 (-) True G1833569
TU2099855 lncRNA downstream 19841 14501695 ~ 14501931 (-) True G1833555
TU2099707 lncRNA downstream 183747 14285687 ~ 14338025 (-) True G1833412
TU2099275 lncRNA downstream 272658 14248772 ~ 14249114 (-) True G1833001
TU2099191 lncRNA downstream 395769 14123338 ~ 14126003 (-) True G1832918
TU2100019 lncRNA upstream 214262 14736274 ~ 14736507 (-) True G1833710
TU2100026 lncRNA upstream 224796 14746808 ~ 14747171 (-) True G1833716
TU2100056 lncRNA upstream 252428 14774440 ~ 14774684 (-) True G1833746
TU2100065 lncRNA upstream 266248 14788260 ~ 14788478 (-) True G1833755
TU2100160 lncRNA upstream 282970 14804982 ~ 14806804 (-) True G1833847
XM_021580246.2 mRNA downstream 54709 14376236 ~ 14467063 (-) True LOC110502312
XM_036959888.1 mRNA downstream 542002 13967514 ~ 13979770 (-) False LOC110502308
XM_021580244.2 mRNA downstream 543520 13967514 ~ 13978252 (-) False LOC110502308
XM_036959676.1 mRNA downstream 576942 13890998 ~ 13944830 (-) True LOC110502306
XM_036959678.1 mRNA downstream 576949 13890998 ~ 13944823 (-) False LOC110502306
XR_005039294.1 mRNA upstream 7246 14529258 ~ 14529355 (-) True LOC118943949
XM_036960549.1 mRNA upstream 290428 14812440 ~ 14908222 (-) True LOC110503081
XM_021580254.2 mRNA upstream 645226 15167238 ~ 15186778 (-) False LOC110502316
XM_021580253.2 mRNA upstream 645226 15167238 ~ 15189583 (-) True LOC110502316
XM_021580257.2 mRNA upstream 715620 15237632 ~ 15429965 (-) False LOC110502317
TU2099870 other downstream 843 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 1932072 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 2126125 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 2568139 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 2568139 11918171 ~ 11953633 (-) True LOC110502234
TU2101222 other upstream 644197 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 976742 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 1144191 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 1223626 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 2901463 17423475 ~ 17425320 (-) False LOC110502353

Expression Profile