RNA id: TCONS_00052130


Basic Information

Item Value
RNA id TCONS_00052130
length 1842
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_026799
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53476155 ~ 53486169 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcagaaactgctgatctactgggattttcacgcacaaccatcactagggtttacagtgaatgttctgaaaaagagaaaatatccagtgagcggcagatctgtgggcgcaaatgccttgatgccagaggagaatggccagactggtttcagctgatagaaaggcgacagttactcaaataaccactcgttcaCCATGTGatgaagcgtgaatcatctcagactggtttcacgaacatgacattgagttcactgtactcagatggccttcacagtcaccagatctcaatccaatagagcaccttaagatgtggtggaacaggagattcgcatcagccgataaatctgcagagactgcttgatgctatcatgtcaatatggaccaaaatctctgaggaatatttccagtaccttgtttaacctatgccacaaaggattaagccagttctgaaggcaaaaaggggtccaacacgATATGGGTATGGTGTACCtaaacactgtatatatataaacattaaaattaaagtcAAACCCACAGCTACAGTAATACATTTTGTAGATTTACAGTAACTGACTGATTgaacaaataattttaaagtgATCTCTTAATATTTTCATAGCTTTTAAGTATCCAGTTTGGTTCCCGAAGTTGTTATAACCTTAATAAAACCCTTTTTACcaataaaaattatgttttttacttcatttgacattaaatatacaaataaaaagtgattttttcttttgttacaaAACTACATATACAACAGggatttaaaaagaaagaaaaaaaagaaagaaagaaatattgcCCCTAGTGGTTAGAAAACTCTTACTTAACGTGCTTACATGACAGCAGAGCTGGGGTGTGTTTTGGAGGCGGGAGCAGATTTCATAacattgcatgtacagtataagTATCAGCCTGCAGGCACACATGCACACGTTTCCTCTCTGCTCAGCCTGAAGCTACAAAATTCTGCAACATGATTGGCTTGACAGGGGTGATCGTGCTGCTCATTGCAGTGACTGTAGATGGAAGAATTGGAGACTCCACTAGTGAATCCAGTTACTGCTCCGAGACGAAAGAGTGCTTGCTGTTTGACTTGGTTTGTGCGGGAAGTGATTATGAGGTACGCCACTATGATGCTGCCAAGTGGGTGACCACAGAAGCTGAATCTTATGTCATGGAAATTGCGGTTTCAAGAGCATTCAGGAAACTTTTTAAGTACATCACCGGAGAAAACGAGGCTGGTGCAAAGATTGACATGACCGGGCCAGTCACCATAAAAGTCAACGGGAGCTCGAACATGTGGCAGTCGTCAGTGTATGTGCTCAGCTTCCTCCTGCCCTCCAACTACCAGAGCAAACCACCCAGACCAACTGATCCATCTGTATACTTCACAGACAGTCCAGATATGAAGGTGTACGTCAAAAGCTTCGGTGGCTGGATGTTTTCACTCGTGTCCAAATATCAGACTCAGAGTCTGAAGACAGCGCTGGACAATGCACAGGCTACATATGAGACAGACTACCACTATAATGTGGGCTATAACAGCCCAATGAAGATTACGAACAGGCACAATGAAGTGTGGTTTATTGTGAAGGGTGAGCCTGTGTGTCCTAAGAGTGAATAACTTCAAGTATTTGAGAGAGCTACAAAGAACAGCAGTGCATTACCCTACACTACAGTCCCTGAAAACTAACCTTCctctttttatacatttttaaaatgtgtgttattTTATTCAGCATTAACTGGATTTTACACCATAAATACTTACAATTTTAACGGGTACACCAAAAAAATGTGCATAgcattaactaaaactaaaaaaaatacaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110718-2 Predicted to enable heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000115243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052129 lncRNA downstream 11548 53461700 ~ 53464607 (-) True XLOC_026798
TCONS_00053141 lncRNA downstream 23373 53449116 ~ 53452782 (-) True XLOC_026797
TCONS_00053140 lncRNA downstream 24779 53449116 ~ 53451376 (-) False XLOC_026797
TCONS_00053139 lncRNA downstream 243660 53230710 ~ 53232495 (-) True XLOC_026796
TCONS_00053138 lncRNA downstream 399244 53074847 ~ 53076911 (-) False XLOC_026793
TCONS_00053142 lncRNA upstream 86962 53573131 ~ 53589177 (-) True XLOC_026802
TCONS_00052137 lncRNA upstream 207785 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00052505 lncRNA upstream 356363 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00053143 lncRNA upstream 1262227 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00053144 lncRNA upstream 1305384 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00052128 mRNA downstream 10906 53461576 ~ 53465249 (-) False XLOC_026798
TCONS_00052127 mRNA downstream 10907 53457523 ~ 53465248 (-) False XLOC_026798
TCONS_00052126 mRNA downstream 10932 53457192 ~ 53465223 (-) False XLOC_026798
TCONS_00052125 mRNA downstream 361856 53097587 ~ 53114299 (-) True XLOC_026795
TCONS_00052124 mRNA downstream 383646 53083194 ~ 53092509 (-) True XLOC_026794
TCONS_00052131 mRNA upstream 4936 53491105 ~ 53508580 (-) True XLOC_026800
TCONS_00052132 mRNA upstream 39856 53526025 ~ 53559581 (-) False XLOC_026801
TCONS_00052133 mRNA upstream 43545 53529714 ~ 53559408 (-) False XLOC_026801
TCONS_00052134 mRNA upstream 43547 53529716 ~ 53533128 (-) True XLOC_026801
TCONS_00052135 mRNA upstream 201476 53687645 ~ 53722182 (-) False XLOC_026803
TCONS_00052111 other downstream 1568593 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 1927905 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 3358193 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 3660868 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 4398276 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052136 other upstream 203141 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 1577098 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 1970184 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 2158040 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 2994643 56480812 ~ 56574965 (-) True XLOC_026833

Expression Profile

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