RNA id: TU2101222


Basic Information

Item Value
RNA id TU2101222
length 711
RNA type TUCP
GC content 0.48
exon number 1
gene id G1834810
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15166209 ~ 15166919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccacttccttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatgctcccattcattctttcctttacacggatcagtcgtcctggtccctttgaagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaacacagcattctttgtcctccaaacacgacaagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctctcaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtacttgcttaagcagggggacacgtctggcactgcaggatatgagtccctggcggcgtagtgtgttgctttgttactttgttcccagctctctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcaccgttcttgtcatcattttgaccccacggggtgagatcttgcgtggagccccaaatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101210 lncRNA downstream 2224 15161796 ~ 15163985 (-) True G1834799
TU2100584 lncRNA downstream 5686 15160266 ~ 15160523 (-) True G1834248
TU2100576 lncRNA downstream 8374 15157624 ~ 15157835 (-) True G1834240
TU2100574 lncRNA downstream 8764 15157243 ~ 15157445 (-) True G1834238
TU2100562 lncRNA downstream 19090 15146763 ~ 15147119 (-) True G1834226
TU2101200 lncRNA upstream 70725 15237644 ~ 15243483 (-) True LOC110502317
TU2101202 lncRNA upstream 327965 15494884 ~ 15498277 (-) False LOC110502321
TU2101203 lncRNA upstream 327965 15494884 ~ 15498277 (-) False LOC110502321
TU2101204 lncRNA upstream 327965 15494884 ~ 15498277 (-) True LOC110502321
TU2101358 lncRNA upstream 362366 15529285 ~ 15529510 (-) True G1834944
XM_036960549.1 mRNA downstream 257987 14812440 ~ 14908222 (-) True LOC110503081
XM_036959857.1 mRNA downstream 408454 14497002 ~ 14757755 (-) False LOC110502313
XM_036959858.1 mRNA downstream 408454 14497002 ~ 14757755 (-) True LOC110502313
XR_005039294.1 mRNA downstream 636854 14529258 ~ 14529355 (-) True LOC118943949
XM_021580246.2 mRNA downstream 699146 14376236 ~ 14467063 (-) True LOC110502312
XM_021580254.2 mRNA upstream 319 15167238 ~ 15186778 (-) False LOC110502316
XM_021580253.2 mRNA upstream 319 15167238 ~ 15189583 (-) True LOC110502316
XM_021580257.2 mRNA upstream 70713 15237632 ~ 15429965 (-) False LOC110502317
XM_036960462.1 mRNA upstream 70713 15237632 ~ 15429966 (-) False LOC110502317
XM_021580259.2 mRNA upstream 73525 15240444 ~ 15429967 (-) False LOC110502317
TU2099870 other downstream 645280 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 2576509 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 2770562 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 3212576 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 3212576 11918171 ~ 11953633 (-) True LOC110502234
TU2101341 other upstream 331835 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 499284 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 578719 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 2256556 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 2256556 17423475 ~ 17424399 (-) True LOC110502353

Expression Profile