RNA id: TU2101553


Basic Information

Item Value
RNA id TU2101553
length 1056
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1835094
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15744227 ~ 15745282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctgaatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctatatttggctccatccatcttcccatcaatttgaaccatcttccctgtccctgctgaagaaaagcaggcccaaatcatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctcctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcttcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggattattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaagggctgaataattttgcacgcccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101550 lncRNA downstream 128 15740983 ~ 15744099 (-) False G1835093
TU2101551 lncRNA downstream 128 15742236 ~ 15744099 (-) True G1835093
TU2101463 lncRNA downstream 47647 15693307 ~ 15696580 (-) False G1835042
TU2101466 lncRNA downstream 48800 15693307 ~ 15695427 (-) True G1835042
TU2101358 lncRNA downstream 214717 15529285 ~ 15529510 (-) True G1834944
TU2101528 lncRNA upstream 356 15745638 ~ 15746950 (-) False G1835092
TU2101436 lncRNA upstream 5793 15751075 ~ 15752563 (-) True G1835016
TU2101556 lncRNA upstream 10280 15755562 ~ 15755761 (-) True G1835096
TU2101562 lncRNA upstream 20955 15766237 ~ 15766503 (-) True G1835102
TU2101570 lncRNA upstream 29953 15775235 ~ 15775595 (-) True G1835110
XM_021580273.2 mRNA downstream 38808 15702242 ~ 15705419 (-) True LOC110502330
XM_021580270.2 mRNA downstream 73004 15666203 ~ 15671223 (-) False tmem254
XM_036960995.1 mRNA downstream 97979 15633647 ~ 15646248 (-) True LOC110502324
XR_005039249.1 mRNA downstream 208163 15534830 ~ 15536064 (-) True LOC118943902
XM_021580264.2 mRNA downstream 217705 15518820 ~ 15526522 (-) True pwwp2b
XM_021580277.2 mRNA upstream 54088 15799370 ~ 15804927 (-) False LOC110502332
XM_021580276.2 mRNA upstream 54089 15799371 ~ 15804934 (-) False LOC110502332
XM_021580275.2 mRNA upstream 54089 15799371 ~ 15804977 (-) True LOC110502332
XM_021580278.2 mRNA upstream 119789 15865071 ~ 15869051 (-) True LOC110502333
trnai-uau-47 mRNA upstream 630598 16375880 ~ 16375973 (-) True trnai-uau-47
TU2101434 other downstream 73047 15666203 ~ 15671180 (-) True tmem254
TU2101341 other downstream 243966 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 577308 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 1223298 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 3154527 12580816 ~ 12589700 (-) True LOC110502275
TU2101534 other upstream 356 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 1678193 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 1678193 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 1964490 17709772 ~ 17719204 (-) True G1837980
TU2104675 other upstream 1979981 17725263 ~ 17730512 (-) False LOC110502361

Expression Profile