RNA id: TCONS_00052134


Basic Information

Item Value
RNA id TCONS_00052134
length 2521
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_026801
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53526025 ~ 53559581 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGATAGATACAGACTGCCCAGAGGCTAAGCGACTTAAGGTGGAAGAACCAAGCATTCTGTCAGATGGTGAGGATGCAGTTGACAGCAGACAGTGGACACAGCATCACTTGGCAGCAGCAGATATCCGCATGCCACCTTCCATGGCACTTACACCACCACAAGGAGAGTTTGACAGTGACTGCATGGATGTTAATGTCAGAGGCCCTGATGGCTTCACACCTCTGATGCTGGCATCTTTCTGTGGAGGAGGGCTTGAGCCAGAGGTGACCGAAGATGATGACTCAGATGAATCCTCAGCCAACATCATATCTGACCTCATTTACCAGGGAGCATCACTTGCAGCTCAAACTGACCGCACTGGAGAGACTGCTCTGCACCTGGCTGCACGCTATGCCCGGGCAGATGCAGCTAAAAGACTCCTGGATGCTGGGGCTGATGCAAATGCACAGGATAACACAGGTCGCTCACCTTTGCATGCAGCTGTGGCAGCTGATGCACAGGGAGTTTTCCAGATTCTGATCAGGAACCGTGCCACAGACTTGGACGCGCGCATGTATGATGGCTCCACTGCTCTGATACTTGCAGCCCGTCTGGCAGTAGAGGGCATGGTGGAAGAGTTGATCACCTGCCATGCTGATGTTAATGCTGTTGATGAAATCGGAAAGTCAGCATTGCACTGGGCAGCAGCAGTCAATAACGTTGAAGCTACTATTGCCTTGTTGAAGAATGGTGCCAATAAAGATATGCAAGACCTCAAGGAGGAGACTCCGCTGTTCTTGGCTGCCAGGGAAGGCAGCTGTGAGGCAGTAAAGGTGTTGTTGGCTCACTTTGCCAATAGGGAAATAACAGATCACATGGACAGACTCCCTCGAGATATTGCCCAGGAGCGCATGCATCATGACATTGTGCAGCTACTGGATGAATATAACACTGTGCGAAGTCCACAGGGTCATGCAGGGGCAGGTCACCACCTCTCTGGTAGCCACACACTCTCACCGCTCATGTGCCCTCCCAGCAACTTCCTCCAAGGGCTGAAAAGTACCCCTCAGGGTAAGAAGAACCGTCGCCCGGGAGCTAAAGGCATTGGTGGACAGCACGCTTCCGGCCTGAAAGATTCAGCCAAAGGACGCAACAAACGGCTGACTCTAGACATGCAGAGTGCTTTGCTGGATAGCTCTGTCACGCTCTCCCCTGTTGACTCACTGGATTCACCACGTGGAGGCGCCAGTAACGCTGGCTACGTCACCAATCCAACCTCACCAGCTGCCATGCCCTCTCCCGGCCTTTTCCACTCCTCTATGTCTGTCCCTAATACCCCTATGGTGCACAGCAGTATCCTGGACAGCACCAGCCCTTTTGCTGTCTCCCTGGCACAGTTGAGTGACCTGGGAGATGGTGGGCTCTCAATGCAGGGGCGTGTGGGCATGCAAGGAGGGGGTGTCAACCCAGGCCCCCATAACTACGTGATGAACGCCGGTCAAATGAGCCTTAGTATGGGCATGGTAAGTCCAGTAAGCGTGCCGTTTGACTGGCACAACCGCATGCCTCCATCTTCTCAGTGCAGTCAGCCAATGATCAGCATGGTGCATCCAGTAAGTAGTCAAGCAGGCATGCTCCCACAAACACCAACCCTGCAAAGCAGCATGCTATTGCACCAGCAGGTGTTCCGTAATGCCCAGCAGCCCATCCTGCAGCCAACACCTGTCTCCAGCACACCGTCTATTAGTCCAGTCAAACTGCCTCCCATTGCTGAGCAGCAGCCGCAGCAACTTCACAGCCACACCCTCACCAACCCCAACCTCTCCCGCATGGCCACCTCCACTCCCCCAACTCCACAGCAGGCACAGCCTCCTCCAGCTTTCTACCAACCACAACAGCCACAAGCTCAGCCGCCGCAGGCCCCGACAGCCCCTCAGGCAACGCAAGCACAAGCTATCCCATCTCAGGCACCCCCAGCACAGGTGAGCGGCAGCACCGCAGGCCCAGAGGATTACCCCACACCACCTTCCCAGCACAGCTACAGCTCAGCCATGGATGCAACGCCTAAGCATTATCTGCATGTGCCCAATGAACATCCTTACCTGACCCCTTCTCCAGAGTCTCCAGAGCCCTGGTCCAGCCCTTCCCCTCACTGTGTGTCTGATTGGTCTGACTCCACACCCAGCCCAGCTGTCACAGCTCCTTCTCAAACCCAGATTTCACAAGTCCAGGAGTCCAACGGGAAGATGCAGGTGTTTGCTTGAGCAGCCCAACCTACCTTAAATGTTTGTGACTTTGAAAGTTTAGAGCTGACAATCGTCACTCTAGGGCTTGTGTTTTTAACTTGCCTGTCAGCCCATTTCCAAGATTTTGATTGGATTAGGATTGACTGTTTTGCGTCAAGAAGACCATCTGCCGGTATCCGCAGAAAGAAAGTTAAAGGGAAATTTGTGTTGTCTTAAAAAGAAAAGACAATTTAATGAAGTAAGACATTCTGTCACAGATGgacttgttttttaattattaaaaaaatatatatg

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035019 somatic stem cell population maintenance biological_process
GO:0007275 multicellular organism development biological_process
GO:0048259 regulation of receptor-mediated endocytosis biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0001840 neural plate development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035633 maintenance of blood-brain barrier biological_process
GO:0043114 regulation of vascular permeability biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0035907 dorsal aorta development biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0097746 blood vessel diameter maintenance biological_process
GO:0001889 liver development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0061056 sclerotome development biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0060842 arterial endothelial cell differentiation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04330 Notch signaling pathway
ko04371 Apelin signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04919 Thyroid hormone signaling pathway
ko04320 Dorso-ventral axis formation
ko05200 Pathways in cancer
ko05206 MicroRNAs in cancer
ko05224 Breast cancer
ko05165 Human papillomavirus infection
ko01522 Endocrine resistance

ZFIN:

id description
ZDB-GENE-000329-5 Predicted to enable Notch binding activity. Acts upstream of or within several processes, including animal organ development; blood vessel development; and neurogenesis. Predicted to be located in nucleus and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; mesoderm; nervous system; pleuroperitoneal region; and vasculature. Human ortholog(s) of this gene implicated in CADASIL 1; infantile myofibromatosis; and lateral meningocele syndrome. Orthologous to human NOTCH3 (notch receptor 3).

Ensembl:

ensembl_id ENSDART00000183591

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052129 lncRNA downstream 65109 53461700 ~ 53464607 (-) True XLOC_026798
TCONS_00053141 lncRNA downstream 76934 53449116 ~ 53452782 (-) True XLOC_026797
TCONS_00053140 lncRNA downstream 78340 53449116 ~ 53451376 (-) False XLOC_026797
TCONS_00053139 lncRNA downstream 297221 53230710 ~ 53232495 (-) True XLOC_026796
TCONS_00053137 lncRNA downstream 452805 53074847 ~ 53076911 (-) True XLOC_026793
TCONS_00053142 lncRNA upstream 40003 53573131 ~ 53589177 (-) True XLOC_026802
TCONS_00052137 lncRNA upstream 160826 53693954 ~ 53698076 (-) True XLOC_026803
TCONS_00052505 lncRNA upstream 309404 53842532 ~ 53842784 (-) True XLOC_026805
TCONS_00053143 lncRNA upstream 1215268 54748396 ~ 54784321 (-) True XLOC_026811
TCONS_00053144 lncRNA upstream 1258425 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00052131 mRNA downstream 21136 53491105 ~ 53508580 (-) True XLOC_026800
TCONS_00052130 mRNA downstream 43547 53476155 ~ 53486169 (-) True XLOC_026799
TCONS_00052128 mRNA downstream 64467 53461576 ~ 53465249 (-) False XLOC_026798
TCONS_00052127 mRNA downstream 64468 53457523 ~ 53465248 (-) False XLOC_026798
TCONS_00052126 mRNA downstream 64493 53457192 ~ 53465223 (-) False XLOC_026798
TCONS_00052135 mRNA upstream 154517 53687645 ~ 53722182 (-) False XLOC_026803
TCONS_00052138 mRNA upstream 897965 54431093 ~ 54500354 (-) True XLOC_026806
TCONS_00052139 mRNA upstream 969222 54502350 ~ 54524194 (-) False XLOC_026807
TCONS_00052140 mRNA upstream 969240 54502368 ~ 54524194 (-) True XLOC_026807
TCONS_00052141 mRNA upstream 991099 54524227 ~ 54544612 (-) True XLOC_026808
TCONS_00052111 other downstream 1622154 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 1981466 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052087 other downstream 3411754 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052082 other downstream 3714429 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052070 other downstream 4451837 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052136 other upstream 156182 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052148 other upstream 1530139 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052166 other upstream 1923225 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052174 other upstream 2111081 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 2947684 56480812 ~ 56574965 (-) True XLOC_026833

Expression Profile

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